Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00329 ATGGCTGACACTAGTTCTTATGGGCCAACACCTCCGCTGAAAAATGAGCTTGACATTGTGATCCCCACCATAAGGAACCTTGACTTTCTTGAGATGTGGAGGCCCTTCTTTCAGCCTTACCATTTGATCATTGTGCAGGATGGTGACCCCACCAAAACCATTAAGGTTCCTCCTGGTTTTGACTATGAACTATACAACCGCAATGACATCAACAAGCTTTTGGGTCCAAGGGCCTCTTGCATCTCCTTCAAGGACTCTGCTTGTCGCTGTTTTGGCTACATGGTGTCTAAGAAGAAGTACATTTACACCATTGATGATGACTGTTTTGTTGCCAATGATCCATCTGGGAAACCTATTAATGCACTTGAGCAGCATATTAAAAACCTTCTGTGTCCATCCACACCCTACTTCTTCAATACCCTTTATGACCCCTTCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTTAGTCTTCGTGAAGGCGTACCAACTGCTGTTTCCCATGGACTTTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTTGAGAGGAACACTAGGTATGTAGACGCTGTTTTGACCATTCCAAAAGGCACTTTGTTCCCCATGTGTGGGATGAACTTGGCATTCGATCGTGATCTTATTGGACCAGCAATGTACTTTGGTCTCATGGGAGATGGTCAACCAATTGGACGCTACGACGACATGTGGGCTGGCTGGTGCTGCAAGGTGATCACTGATCATTTGGGGCTAGGAATCAAGACTGGTCTACCTTATATCTATCACAGCAAAGCCAGTAACCCATTTGTAAACCTGAGGAAAGAGTACAAAGGCATATTCTGGCAGGAAGACATTATTCCATTCTTCCAGAATGTTGTTCTTCCAAAAGAATGCACCACTGTTCAGAAGTGCTACATTGAGCTCTCCAAGCAAGTCAAGGAAAAACTCACAAAGGTAGATCCTTACTTTGACAAGCTGGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTTAACCCTGCTGGGGCATCTAAGGCCAAGAAATAA 1071 0.4519 MADTSSYGPTPPLKNELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPTKTIKVPPGFDYELYNRNDINKLLGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVANDPSGKPINALEQHIKNLLCPSTPYFFNTLYDPFREGADYVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCCKVITDHLGLGIKTGLPYIYHSKASNPFVNLRKEYKGIFWQEDIIPFFQNVVLPKECTTVQKCYIELSKQVKEKLTKVDPYFDKLADAMVTWIEAWDELNPAGASKAKK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00329 356 Pfam Reversibly glycosylated polypeptide 14 347 IPR037595 -
Cca09g00329 356 PANTHER ALPHA-1,4-GLUCAN-PROTEIN SYNTHASE [UDP-FORMING]-LIKE PROTEIN 8 354 - -
Cca09g00329 356 PIRSF UPTG 7 351 IPR004901 GO:0016866|GO:0071669
Cca09g00329 356 PANTHER UDP-ARABINOSE MUTASE 8 354 IPR037595 -
Cca09g00329 356 SUPERFAMILY Nucleotide-diphospho-sugar transferases 17 226 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00329 Cca-Chr9 7717171 7720455 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00329 K13379 - gmx:100803287 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00329 09 7717171 7720455 Cca03g00680 03 12355918 12358570 ECH
Cca09g00329 09 7717171 7720455 Cca09g00329 09 7717171 7720455 ECH
Cca06g00525 06 15910057 15913927 Cca09g00329 09 7717171 7720455 ECH
Cca09g00329 09 7717171 7720455 Cca07g02274 07 51185261 51188390 PCT