Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00326 ATGAGGCTTGTCATCTCAGCTCTTTGTGTTGCTGTGTTATTCTCCTGGGCGGTTGCTTATGATCCTTTGGATCCAAACGGAAACGTAACAATCAAATGGGATGTCATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACACTTCACAATTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCCAAGAAAGAAGTTATTTGGTCCATGGTAGGAGCTCAAGCCACAGAACAAGGAGACTGCTCTAAGTTCAAAGGCAACATACCTCATTGTTGCAAGAAAACTCCCACAATTGTGGACCTTCTCCCTGGTGTTCCCTACAACCAGCAATTTTCAAACTGTTGTAAGGGTGGAGTGGTGGCAGCATGGGGCCAAGATCCTTCACAAGCCATCTCATCCTTCCAAGTGAGTGTAGGCCAAGGTGGCACCTCAAACAAGACAGTTAAACTCCCCAAGAACTTCACTCTCTTGGCTCCAGGACCAGGCTACACTTGTGGCCCTGCAAAGGTTGTTCCTTCCACCACTTTCCTTACACCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTTCTGGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTGTCATCCTTCTATAACGAAACCATTACCACTTGTCCCTCTTGTGCCTGTGGCTGCCAGAACAAGAAGAATTGTGTGAAGAGTGACTCCAAAATTCTGAGCATGGTGGGGGTTCACACTCCAAAGAAAGACAACCAACCATTGCTGCAGTGCACGCATCACATGTGTCCAATCAGGGTCCACTGGCATGTGAAGCAGAATTATAAGGACTACTGGCGAGTCAAGATCGCTGTAACAAACTTTAATTACAGGATGAATTACTCCCTCTGGACTCTTGCTATTCAGCATCCAAATCTTAACAATCTCACCCAAGTTTTCAGTTTTGATTACAAGCCTCTTCTTCCCTATGAGTCCATAAATGACACTGGCATGTTCTATGGCATGAAGTACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGAACAAGGATACATTCACATTCAAACAGGGGTGGGCATTTCCTCGCAAGGTCTACTTTAATGGTGATGAATGCATGCTTCCCCCACCTGACACCTACCCCTTTCTCCCTAACTCTGCACCTGCAAGCCTACTTACCTTCCCAGCATTTATTTTCCTATTGCTTTTCATGCTAGCAGTTTGGTAA 1296 0.4552 MRLVISALCVAVLFSWAVAYDPLDPNGNVTIKWDVMSWTPDGYVAVVTLHNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQATEQGDCSKFKGNIPHCCKKTPTIVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQVSVGQGGTSNKTVKLPKNFTLLAPGPGYTCGPAKVVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITTCPSCACGCQNKKNCVKSDSKILSMVGVHTPKKDNQPLLQCTHHMCPIRVHWHVKQNYKDYWRVKIAVTNFNYRMNYSLWTLAIQHPNLNNLTQVFSFDYKPLLPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKNKDTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNSAPASLLTFPAFIFLLLFMLAVW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00326 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
Cca09g00326 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
Cca09g00326 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0031225
Cca09g00326 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00326 Cca-Chr9 7650046 7653115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00326 19 427 COBRA Gene Family AT3G29810 69.417 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00326 - - gmx:100798678 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00326 09 7650046 7653115 Cca09g00326 09 7650046 7653115 ECH
Cca07g02273 07 51177258 51179516 Cca09g00326 09 7650046 7653115 ECH
Cca09g00326 09 7650046 7653115 Cca07g02272 07 51162650 51176577 PCT
Cca07g02273 07 51177258 51179516 Cca09g00326 09 7650046 7653115 PCT