Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00325 ATGCTTTTCCGTTTCAGCTTCACACCCACGATCAGATCCTTCCTCTATCCCCGTTCATGCATTCTGCTCTTGCTTCTCCTCTTCTGCACGTGCTTCACTGCAACAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATGTTATAAATTGGACACCTGATGGTTATGTTGCTGTTGTTACTATGTACAACTTCCAACAATATCGTCATATCGCAGCACCTGGTTGGTCACTAGAATGGACATGGGCAAAGAAGGAGGTAATATGGGCCATGGTGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATATAAGGGAAACGTCCCACATTGCTGTAAAAGGACCCCAACAGTTGTAGATTTACTTCCTGGAACACCTTACAATCAACAAATTGCAAACTGCTGCAAGGGTGGTGTACTCAGCTCATGGGCACAGGATCAATCCAAGGCAGTTGCAGCATTTCAAGTTAGTGTAGGTAGTGCTGGTACTACTAACAAAACGGTCAAACTGCCAAAGAATTTCACCTTGAAAGCACCAGGTCCCGGTTATACATGTGGGCCGGCAAATATTGTGAAACCAACTCAATTCATACAACCTGACAAAAGGAGAGTAACACAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCCCAGAGAGCACCCACTTGCTGTGTCTCACTCTCATCTTTCTATAACGATACTGTTGTACCCTGCCCTACGTGTGCATGTGGCTGCCAGGGTAACTCATCTCAATCAGGGGACTGTGTAGATCCAGATTCACCACATCTGGAATCAGTTGTTTCCAACCCTGGACCTGGGAATAGTATTACACCTTTAGTTCGATGTACCCGTCATATGTGCCCAATCCGAGTTCACTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAAGTCACTATTACTAATTTCAATTACAGGATGAATTATTCTGATTGGAACTTGGTTATTCAACATCCAAACTTTGACAATCTGACCCAGATTTTCAGTTTCAACTACAACTCACTAAATCCCTACGGGTCAATAAATGATACAGCAATGCTTTGGGGAGTTAAGTTCTACAATGATTTTCTCATGCATGCTGGCCCTCTTGGTAATGTGCAGTCAGAGCTACTTTTCAGAAAGGATAAATCAACTTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGTGACATCTGTGTGATGCCACAACCTGATGCTTATCCTTGGTTACCTAATGCTGGTTCCAGGCAAGAGGTTTCCCTGCTTGCTTTGGTGGTGACCTCTTTGGTAGCCTTGGTATTTTATTCATATGCTTAA 1374 0.4367 MLFRFSFTPTIRSFLYPRSCILLLLLLFCTCFTATEAYDPLDPNGNITIKWDVINWTPDGYVAVVTMYNFQQYRHIAAPGWSLEWTWAKKEVIWAMVGGQTTEQGDCSKYKGNVPHCCKRTPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDQSKAVAAFQVSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPANIVKPTQFIQPDKRRVTQALMTWNVTCTYSQFLAQRAPTCCVSLSSFYNDTVVPCPTCACGCQGNSSQSGDCVDPDSPHLESVVSNPGPGNSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVIQHPNFDNLTQIFSFNYNSLNPYGSINDTAMLWGVKFYNDFLMHAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDICVMPQPDAYPWLPNAGSRQEVSLLALVVTSLVALVFYSYA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00325 457 PANTHER PROTEIN COBRA 17 455 IPR006918 GO:0010215|GO:0031225
Cca09g00325 457 Pfam COBRA-like protein 61 224 IPR006918 GO:0010215|GO:0031225
Cca09g00325 457 PANTHER COBRA-LIKE PROTEIN 17 455 - -
Cca09g00325 457 PIRSF COBRA 12 457 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00325 Cca-Chr9 7644751 7649271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00325 13 453 COBRA Gene Family AT3G02210 72.336 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00325 - - gmx:100797383 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00325 09 7644751 7649271 Cca09g00325 09 7644751 7649271 ECH
Cca07g02272 07 51162650 51176577 Cca09g00325 09 7644751 7649271 ECH
Cca07g02272 07 51162650 51176577 Cca09g00325 09 7644751 7649271 PCT