Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00323 ATGGCCTCTGAAATTAACTGGGACAGGTTAGATAAAACGAAGTTCTTTGTTGTGGGAGCAGGACTCTTTACGGGTGTTACAGTGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCTTCAAAGGATACTTTGGAGAGAAGTGCATTTTCTGTTGTGAAAGGATTACTTAAAACGGATGGTATTCGTGGTTTGTATAAAGGGTTTGGTCCGGTTATCACTGGTACGATTCCTGCCAGAATCATATTCCTCACCGCCTTGGAGACGACAAAGGCGGCTTCTCTCAGGATGATGGAGCCATTTACACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGGATCAGCATTTTTGTCACAACTTCTGTTTGTGCCAGTTGATGTGGTTAGCCAGAAGTTAATGGTGCAAGGATTCTCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTACTCGTAAGTTGATAAGGTCTGATGGCATCAAGGGATTATATAGAGGATTTGGCCTATCTGTCATGACTTATACACCATCTAGTGCTGTCTGGTGGGCAAGTTATGGCTCAAGTCAACGCTACATATGGAGATTATTGGGACATAGTGACAGTGAGGTAGGTACTCCGAGTCTACCAAAGAGTGAGGTAGGTATTCCGAGTCTACCGAAGAGTGAGGCAAGTATTCCGAGTCTACCAGAGATTATATTTGTTCAGGCTACTGGTGGGATTATTGCTGCTGCTACTGCATCCTGCTTTACAACCCCATTGGATACTATCAAGACACGGTTACAGGTGACGGCACTTGAAAAGAAAATATCGGTAAAACAAGTTGTTAAAGACTTGATCCGTGAGGATGGTTGGAAAGGTTTATATAGAGGATTAGGTCCAAGGTTTTTTAGCATGTCAGCGTGGGGTACTTCAATGATATTGGCATATGAATATCTGAAGCGTTTGTGTGCAAAAGATGAAGAGGCAATTGATCGGTAA 1002 0.4381 MASEINWDRLDKTKFFVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIRGLYKGFGPVITGTIPARIIFLTALETTKAASLRMMEPFTLSETTQAAIANGIAGMGSAFLSQLLFVPVDVVSQKLMVQGFSGHAQYSGGLDVTRKLIRSDGIKGLYRGFGLSVMTYTPSSAVWWASYGSSQRYIWRLLGHSDSEVGTPSLPKSEVGIPSLPKSEASIPSLPEIIFVQATGGIIAAATASCFTTPLDTIKTRLQVTALEKKISVKQVVKDLIREDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEEAIDR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00323 333 Pfam Mitochondrial carrier protein 113 200 IPR018108 -
Cca09g00323 333 Pfam Mitochondrial carrier protein 23 95 IPR018108 -
Cca09g00323 333 Pfam Mitochondrial carrier protein 242 327 IPR018108 -
Cca09g00323 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 238 323 IPR018108 -
Cca09g00323 333 SUPERFAMILY Mitochondrial carrier 8 320 IPR023395 -
Cca09g00323 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 199 IPR018108 -
Cca09g00323 333 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 229 329 - -
Cca09g00323 333 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 2 218 - -
Cca09g00323 333 Gene3D Mitochondrial carrier domain 13 332 IPR023395 -
Cca09g00323 333 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 229 329 - -
Cca09g00323 333 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 2 218 - -
Cca09g00323 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 96 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00323 Cca-Chr9 7599187 7606673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00323 5 328 Chloroplast and Mitochondria Gene Families AT5G15640 68.000 3.98e-156 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00323 K15121 - gmx:100819519 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00323 09 7599187 7606673 Cca09g00323 09 7599187 7606673 ECH
Cca09g00323 09 7599187 7606673 Cca07g02271 07 51153460 51160641 PCT