Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00319 ATGAGGTTCAACAGTGTCACAGCCTTCGTAACACTCTTCCTCCTTCTCCATCTCTCCTCACACCTCCAAGCATACAACCCTGAGAACCGTTTCACCATCTGTTGCGGCACCATCGGAAAATTCTCAGACGGTGAAAGGACATGGGAGGGGGACGCAGGCACAAAGCTCTTGTCTCATCAAGACGGCACTGTTTCAGCCAAAGCAACGACACAATCTCCTTCTATGAATCAAGTCCCCTTCACCACAGCGCGCTTGTCCCGTTCCCAATTCAACTACTCCTTTCCTGTCACTACAGGTCCTAAATTCATTCGTCTCTTCTTTTACCCAGCTTCTTACCCTTCTTTTCCCCGCACCGATGCATCCTTCACTGTTCACTCCAACCAATTCACCCTCCTCGATGGCTTCAACGCCTCTCTGAACGCCGACGCTCAAAACACGGAAACCATCTTCAAAGAATATGTGATCAACGTGGAAAGTGGTGATAGGCTCAACCTCAGCTTCACTCCATCGCGACCAAACTCCTACGCTTTTGTCAACGGAATCGAGGTATTATCCATGCCCAGCGATCTGTATTACACGTCACCAAATGACGTAGGGTTCACGCTCGTGGGACACGACATGCTATATAGCGTTGAAAGCAGCGCTGCGCTGGAGACAGAGTATAGAATCAAAGTTGGAGGGCAAGCAATCTCACCACGAAATGACAGCGGTTTGTTAAGGAATTGGGCTGGGCACGATCAAGATTATTTAATGACACAAAATTCACAGAATAATGATCTACCAGCTGACTTGGCTAATAAGAACATAACCGTGAATCCTGATTACGTGGCACCCAAGGAGCTGTACAGAACAGCGCGTAACATGGGCACAAACGCCACTCTCAACAAAATCAGCAACCTCACTTGGGAGTTTCCCGTTGATTCTGGCTTCACTTACATGCTCAGACTCCACTTTTGCGAACTTGACCCCAGTATTACTGACGTCGGTAACAGGGTGTTCTTTATTTACATAGCGACCCAGTTGGCTGAGGACCAAGCTGATGTTATGAAATGGAGCCAGAATCAGAAAGGTCTCGCTGTACACAGAAACTACGCCGTTTTAATTCCCACAAATGATACTCAGAAAAAGGTTAATCTCTCCCTCCAAATGCACTCTTATTATGATCGTAGGGTTTCAATATATGACGACGCGTTCTTGAACGGTATTGAGATATTCAAAATCAGCGTCGACAACCTCGCAGGACCTAACCCAGACCCGATTCAGACTCCACAGAGCAACGTACCCGTCCAAAAGGAAAAGAGCCGCAGCGGCAGCGAAACCAAGATAATCGCTGTCATCTCGGAGGTGGTATCTGGCATCGTTTTGATCTCCTTTGTCATTTTCCTCGTCGTGTTTTTCGGACGCAAGAAAACCACTGAAACGACTGAGTCAACAAACACGAAGAACTCTTCCCTACCTTGCGAACGCTGCCGCAACTTCTCCCtggtcgagatcaaatccgccacgaacaacttcgacgacgtcctcatggtgggcgtcggggggttcggccatgtctacaagggctacatcgacgccggtttcacccaagtcgctatcaagcgcctcaaaccggactcgcaacagggggcgcacgagttcatgaacgagatcgagatgctctcgcagctccgccacctccatctcgtctccctcattggatactgcaacgataacaaggagatgatcctgaggccgtcgatgAACGACGTCGTTGGAATGCTGGAGTTTGCACTGCAACTGCAAGAGAGTGCGGAGCAGAGTGAAAATGAAAAAGGAGATGAAATTAGTGACAAAACGTTCACGACTTGGAGAATGGATCAAGgtaatctttaa 1875 0.4069 MRFNSVTAFVTLFLLLHLSSHLQAYNPENRFTICCGTIGKFSDGERTWEGDAGTKLLSHQDGTVSAKATTQSPSMNQVPFTTARLSRSQFNYSFPVTTGPKFIRLFFYPASYPSFPRTDASFTVHSNQFTLLDGFNASLNADAQNTETIFKEYVINVESGDRLNLSFTPSRPNSYAFVNGIEVLSMPSDLYYTSPNDVGFTLVGHDMLYSVESSAALETEYRIKVGGQAISPRNDSGLLRNWAGHDQDYLMTQNSQNNDLPADLANKNITVNPDYVAPKELYRTARNMGTNATLNKISNLTWEFPVDSGFTYMLRLHFCELDPSITDVGNRVFFIYIATQLAEDQADVMKWSQNQKGLAVHRNYAVLIPTNDTQKKVNLSLQMHSYYDRRVSIYDDAFLNGIEIFKISVDNLAGPNPDPIQTPQSNVPVQKEKSRSGSETKIIAVISEVVSGIVLISFVIFLVVFFGRKKTTETTESTNTKNSSLPCERCRNFSLVEIKSATNNFDDVLMVGVGGFGHVYKGYIDAGFTQVAIKRLKPDSQQGAHEFMNEIEMLSQLRHLHLVSLIGYCNDNKEMILRPSMNDVVGMLEFALQLQESAEQSENEKGDEISDKTFTTWRMDQGNL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00319 624 ProSitePatterns Protein kinases ATP-binding region signature. 511 534 IPR017441 GO:0005524
Cca09g00319 624 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 23 577 - -
Cca09g00319 624 Gene3D - 216 410 - -
Cca09g00319 624 Gene3D - 28 187 - -
Cca09g00319 624 ProSiteProfiles Protein kinase domain profile. 505 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00319 624 Pfam Protein tyrosine and serine/threonine kinase 511 577 IPR001245 GO:0004672|GO:0006468
Cca09g00319 624 Gene3D Phosphorylase Kinase; domain 1 466 577 - -
Cca09g00319 624 PANTHER OS07G0166700 PROTEIN 23 577 IPR045272 GO:0004714|GO:0006468
Cca09g00319 624 Pfam Malectin-like domain 35 407 IPR024788 -
Cca09g00319 624 SUPERFAMILY Protein kinase-like (PK-like) 477 577 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00319 Cca-Chr9 7440766 7445599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00319 25 577 Receptor kinase-like Gene Family AT3G51550 42.833 2.92e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Cca09g00319 Malectin_like 3.6e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00319 - - gmx:100799780 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00319 09 7440766 7445599 Cca09g00319 09 7440766 7445599 ECH
Cca09g00319 09 7440766 7445599 Cca07g02266 07 51013730 51016303 PCT