Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00306 ATGTCTTCTTCCTCTAGTTCATGGACTGCTCAGGAAAACAAAGCCTTTGAAAATGCTCTAGCTGTTTATGACAAAGACACCCCAAACCGTTGGTGCAACATTGCAAGGGCTGTTGGTGGAAAAACTCCTGAGGAAGTGAAGAGGCACTATGATATCCTTGTGGAGGACATCAGGCGTATTGAGACGGGGCAAGTGCCCTTTCCAATTTACAGGAACCTCAAAGATGGTGCATGA 234 0.4615 MSSSSSSWTAQENKAFENALAVYDKDTPNRWCNIARAVGGKTPEEVKRHYDILVEDIRRIETGQVPFPIYRNLKDGA 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00306 77 Pfam Myb-like DNA-binding domain 6 50 IPR001005 -
Cca09g00306 77 ProSiteProfiles SANT domain profile. 3 58 IPR017884 -
Cca09g00306 77 SUPERFAMILY Homeodomain-like 6 61 IPR009057 -
Cca09g00306 77 SMART sant 4 56 IPR001005 -
Cca09g00306 77 Gene3D - 1 67 - -
Cca09g00306 77 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 72 IPR044636 GO:0003700
Cca09g00306 77 ProSiteProfiles Myb-like domain profile. 1 54 IPR001005 -
Cca09g00306 77 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 3 72 - -
Cca09g00306 77 CDD SANT 8 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00306 Cca-Chr9 7273661 7273894 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca09g00306 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00306 - - gmx:100784910 145.976