Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00296 ATGATCAACAGTACAAAGGAGGCAGAATTTCCACTAAAACAGGAAGGTCTTTCTTCAAGCGATCATCATGAAAAGGAAAAGGCTACATCAAGCTCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCTCGAGCTTTTGGAGGAAATAAAGACAGGCACAGCAAGGTGTGCACTATAAGAGGACTAAGAGATAGAAGGGTGAGGCTTTCAGTTCCCACAGCAATTCACCTCTATGATCTTCAAGATAGGCTTGGACTCAATCAACCAAGCAAGGTTGTAGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCATCTCTTGTTGCTTGTAATAATGATCAATTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACCTTATGGAAACCAAAGTCCAAAGAGGTTTCCGGAGAAATGGTTAGTGGTAAAGCAAATTGgatgaatagaagtgaagatgatgataatgataaaagtagtaataataatgatgataaACAAAGCAATAGTTGTCATGGTGCACATGTTTTGCCAAATAGTCTCTTACCAAGGGCAAATCATCCTTCTTTTTTGGGCTTGATGAACACTATGCCCTCACTTGGTTACCAATGGGACCCTAATTCAGGTGATGTTGCTCAATGGGCAAATCATGGATTTGTTAATCAAGCAGATATACACAGCATTAATGTGGTTCCATTCCCATCAAATTTGGCTCTATCAACTGGGAATACTACTACTCCTCAAATTTTGGTGTGTCCTCCTGGGGCAACACAACCATATTTCCCTTCCCATCATGTTGCATCAATGGAGATGAATCAAAGACAACTCAACCACTATCAGATGCTGAGTTCAAGTTCTCAAAATTTCTTGGCAAATTCTCTCAATCCATCACAAGTTATAAGCCAACAAGGGAAAGTACCATTCAGCTTGGGTAAGCCTAAACTTCTCCATTCTCCTAACAGCAGTGAAAGCCATTCTCGTAAACACTAG 1053 0.3922 MINSTKEAEFPLKQEGLSSSDHHEKEKATSSSSSQWLKLKDPRIVRVSRAFGGNKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVACNNDQFSTSREGSGQNTLWKPKSKEVSGEMVSGKANWMNRSEDDDNDKSSNNNDDKQSNSCHGAHVLPNSLLPRANHPSFLGLMNTMPSLGYQWDPNSGDVAQWANHGFVNQADIHSINVVPFPSNLALSTGNTTTPQILVCPPGATQPYFPSHHVASMEMNQRQLNHYQMLSSSSQNFLANSLNPSQVISQQGKVPFSLGKPKLLHSPNSSESHSRKH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00296 350 MobiDBLite consensus disorder prediction 1 35 - -
Cca09g00296 350 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 349 - -
Cca09g00296 350 MobiDBLite consensus disorder prediction 169 183 - -
Cca09g00296 350 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Cca09g00296 350 MobiDBLite consensus disorder prediction 137 198 - -
Cca09g00296 350 Pfam TCP family transcription factor 54 188 IPR017887 -
Cca09g00296 350 MobiDBLite consensus disorder prediction 331 350 - -
Cca09g00296 350 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 349 IPR005333 GO:0003700
Cca09g00296 350 MobiDBLite consensus disorder prediction 137 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00296 Cca-Chr9 7072993 7076064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00296 36 302 TCP Transcription Factor Family AT3G02150 42.553 1.58e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca09g00296 TCP 3.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00296 - - aprc:113867214 521.161