Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00293 ATGTTTTCTTCTTCTCATTGCAGTTCATTGATCAAATGGAATTCCCTCGCGCAAtttctcttcctcgtcttcctcctctacctctgccCAAACGACGCCGTTTCGCCCGATTCGGACAAATCCGCGCTCCTCCGCCTCAAGTCCTCGGTCTCCGACCCCGCCGGCCTCCTCTCCACGTGGACCGTCACCGGAGGCGGTGACTCCGGCAACTCTGGTCACTGCACCTGGTCCGGCGTCCTCTGCGACGGAAACTCCCGCGTCGTCGCCGTCAACTTCACCGGAAACGGTGCCGGTAACCGGTCCTCTCACCCGTGCGCTGATTTCGCTCAGTTCCCTCTCTACGGATTCGGGATTCGGAGAATCTGCGACGGTAGTAACGGTTCTCTGTTCGGGAACGTTTCTTCTTTAAATATCGTCAGCGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCGTTCAACGCGTTGGAGGGTGAGGTCCCCGAAGGAATTTGGGGCATGGAGAAGCTAGAGGTTCTCGATTTAGAAGGGAATTTGATAAGTGGCTATCTTCCTTTTCGAATCAGCGGGTTGAGGAATTTGAGGGTTCTGAATCTCGGGTTTAACGAAATTGTTGGGGAGATTCCGAGCTCGATTGAATCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGCCTTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTGTCGTTTAACCAGCTTAGTGGGGCTATTCCGCGTGAGATTGGGGAGAATTGTTGGAAGCTTGAACATTTGGATTTGTCTGGGAATTCCATGGTTGAGAAGATTCCGGGGAGTTTGGGGAATTGTGGGAGGTTGAGGACGCTTTTGTTGTATTCCAATTTGTTGGAAGAGGGTATTCCGGTTGAGCTTGGGAAGCTTAGGAGTCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGTTTCGTGCCGAGGGAGCTTGGGAATTGCTCGGAGTTGGCTGTTCTTGTGCTGTCAAATTTGTTTGATCCGCGCGGAGATGTTGTGGGGAGAATGGTTGGTGTGAATGACGAGTTGAATTATTTTGAAGGGGCAATGCCTGTGGAGGTTTTGGCCCTTCCGAAGTTGAGGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCGATTTTCGGGGGAGTTGGGGAGGTGGGTGTGAGAGCTTGGAGATGGTCAATTTGGCTCAGAATTTTTTCAGTGGGGAGTTTCCGAACCAGCTTAGTATCTGCAAGAGGCTGCATTTTCTTGATTTGAGCTCGAATAACCTTACCGGGGAGCTTTCTGAAGAGCTTCATGTTCCCTGTATGACTGTGTTTGATGTTAGTGGGAACATGTTGTCTGGTTCTGTTCCTGATTTCACCGACAACATTTGTGCCCCTGTTCCTTCCTGGAATGGAAATCTGTTTAAAGCTGACAGCGTTTCCCCTCCGTATGCATCCTTTTTTTTGTCGAAGGTTCGTGAGAGATCGCTTTTCACATCAATAGGGGGAGCTGGTATTTCTGTTGTTCACAACTTTGGGCAAAACGGTTTTACTGGCATTCAGTCATTGCCAATAGCACGTGACAGGCTGTGGAAGAAGAGCAGTTACACACTTCTTGTGGGAGAAAATAACCTTGCAGGCCCATTTCCTACATATTTATTTGAGAAATGTGATGGATTAAATGCATTGCTTTTAAATGTTAGTTATAATAGGATATCTGGTCAAATTCCTTCAAATTTTGGTGGAATATGCAGATCATTAAAATTTTTGTACGCGTCTGGCAATCAACTTGGAGGACAGATTCCCCATGATTTAGGTAATTTGGTCTCTCTCGTATCTCTGAACCTCAGTAGGAATCAGTTACAAGGCCAGATTCCCGCCACCCTTGGCCAGATGAAGAATCTGAAGTTTCTTTCTTTAGCTGGTAACAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTGGACCTTTCTTCGAACTCTCTTACTGGTGAGATTCCAGAGGCTGTTGAGAACATGAGAAATCTGACCGATGTTTTGCTCAATAACAACAATCTTTCTGGACACATTCCTGGTGGGTTGGCAAATGTCACTACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGGTCCTTGCCTTCGCATAGTAGCTTGATTAAGTGCAGCAGTGCTGTTGGGAATCCGTTACTAAGTCCCTGCCGTGGAGTTTCTCTGACTGTGCCATCAGGGCAACTAGGGTCGATTGATGACAACTCTTATAATACAGCAGCAGCACCAGCTACTGGCAAAAAGAGTGGGAATGGCTTTAGTTCTATTGAAATAGCTTCCATAACTTCTGCTTCGGCCATTGTTTCGGTTCTTATAGCCCTTATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCTAGGTCCCGGGTTGTTGGTTCTACTAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAATGGAGGTTTTGGGGCAACATATAAGGCAGAGATATCCCCAGGAATCCTGGTGGCAGTGAAACGTCTGGCTGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAAACCCTTGGGAGGCTTCATCATCCGAATCTCGTCACTCTCATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTTGAAAAGTTCATCCAGGAGAGGTCCACAAGAGCTGTGGATTGGAGAATTCTTCACAAGATTGCCTTGGACATAGCCCGCGCACTCGCATATCTGCATGATCAGTGTGTTCCTCGTGTTCTTCATCGCGATGTCAAGCCCAGCAACATCTTGCTGGATGATGATTTCAATGCTTATCTATCCGACTTTGGTTTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACCACTGGTGTAGCTGGAACATTTGGGTACGTCGCTCCGGAATATGCCATGACGTGCCGCGTTTCTGACAAGGCTGATGTGTATAGCTATGGAGTGGTGCTTCTAGAGTTGCTCTCAGACAAGAAGGCACTGGACCCTTCATTTTGTTCTTATGGAAATGGCTTCAACATAGTGGCATGGGCATGCATGCTGCTGAAGCAAGGGAGGGCAAAGGAGTTTTTCACTGCTGGGTTGTGGGAAGCAGGACCTGGAGATGATTTGGTGGAAGTGCTTCACTTGGCAGTTGTGTGTACTGTAGACTCTCTCTCTACCAGACCTACAATGAAACAGGTTGTGAGAAGGCTTAAGCAACTTCAACCAGCATCATGCTAG 3399 0.4666 MFSSSHCSSLIKWNSLAQFLFLVFLLYLCPNDAVSPDSDKSALLRLKSSVSDPAGLLSTWTVTGGGDSGNSGHCTWSGVLCDGNSRVVAVNFTGNGAGNRSSHPCADFAQFPLYGFGIRRICDGSNGSLFGNVSSLNIVSELTELRVLSLPFNALEGEVPEGIWGMEKLEVLDLEGNLISGYLPFRISGLRNLRVLNLGFNEIVGEIPSSIESLESLEVLNLAGNALNGSVPGFVGRLRGVYLSFNQLSGAIPREIGENCWKLEHLDLSGNSMVEKIPGSLGNCGRLRTLLLYSNLLEEGIPVELGKLRSLEVLDVSRNTLSGFVPRELGNCSELAVLVLSNLFDPRGDVVGRMVGVNDELNYFEGAMPVEVLALPKLRILWAPMVNLEGDFRGSWGGGCESLEMVNLAQNFFSGEFPNQLSICKRLHFLDLSSNNLTGELSEELHVPCMTVFDVSGNMLSGSVPDFTDNICAPVPSWNGNLFKADSVSPPYASFFLSKVRERSLFTSIGGAGISVVHNFGQNGFTGIQSLPIARDRLWKKSSYTLLVGENNLAGPFPTYLFEKCDGLNALLLNVSYNRISGQIPSNFGGICRSLKFLYASGNQLGGQIPHDLGNLVSLVSLNLSRNQLQGQIPATLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVLDLSSNSLTGEIPEAVENMRNLTDVLLNNNNLSGHIPGGLANVTTLSAFNVSFNNLSGSLPSHSSLIKCSSAVGNPLLSPCRGVSLTVPSGQLGSIDDNSYNTAAAPATGKKSGNGFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGNGGFGATYKAEISPGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFCSYGNGFNIVAWACMLLKQGRAKEFFTAGLWEAGPGDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPASC 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00293 1132 SMART serkin_6 853 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00293 1132 Gene3D Ribonuclease Inhibitor 36 238 IPR032675 -
Cca09g00293 1132 CDD STKc_IRAK 859 1127 - -
Cca09g00293 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 973 985 IPR008271 GO:0004672|GO:0006468
Cca09g00293 1132 Pfam Protein kinase domain 856 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00293 1132 Gene3D Ribonuclease Inhibitor 239 344 IPR032675 -
Cca09g00293 1132 Gene3D Ribonuclease Inhibitor 357 484 IPR032675 -
Cca09g00293 1132 Gene3D Ribonuclease Inhibitor 514 756 IPR032675 -
Cca09g00293 1132 SUPERFAMILY L domain-like 362 469 - -
Cca09g00293 1132 Gene3D Transferase(Phosphotransferase) domain 1 929 1130 - -
Cca09g00293 1132 ProSitePatterns Protein kinases ATP-binding region signature. 859 881 IPR017441 GO:0005524
Cca09g00293 1132 SMART LRR_sd22_2 142 165 - -
Cca09g00293 1132 SMART LRR_sd22_2 424 447 - -
Cca09g00293 1132 SMART LRR_sd22_2 190 216 - -
Cca09g00293 1132 SMART LRR_sd22_2 664 690 - -
Cca09g00293 1132 SMART LRR_sd22_2 166 181 - -
Cca09g00293 1132 SMART LRR_sd22_2 640 655 - -
Cca09g00293 1132 ProSiteProfiles Protein kinase domain profile. 853 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00293 1132 Gene3D Phosphorylase Kinase; domain 1 816 928 - -
Cca09g00293 1132 SUPERFAMILY Protein kinase-like (PK-like) 835 1124 IPR011009 -
Cca09g00293 1132 Pfam Leucine rich repeat 618 677 IPR001611 GO:0005515
Cca09g00293 1132 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 16 1130 - -
Cca09g00293 1132 SMART LRR_typ_2 235 259 IPR003591 -
Cca09g00293 1132 SMART LRR_typ_2 142 166 IPR003591 -
Cca09g00293 1132 SMART LRR_typ_2 308 332 IPR003591 -
Cca09g00293 1132 SMART LRR_typ_2 664 688 IPR003591 -
Cca09g00293 1132 SMART LRR_typ_2 190 214 IPR003591 -
Cca09g00293 1132 SMART LRR_typ_2 616 640 IPR003591 -
Cca09g00293 1132 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515
Cca09g00293 1132 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Cca09g00293 1132 Pfam Leucine rich repeat N-terminal domain 36 82 IPR013210 -
Cca09g00293 1132 PRINTS Leucine-rich repeat signature 427 440 - -
Cca09g00293 1132 PRINTS Leucine-rich repeat signature 664 677 - -
Cca09g00293 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1130 - -
Cca09g00293 1132 SUPERFAMILY L domain-like 137 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00293 Cca-Chr9 6932865 6936764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00293 21 1132 Receptor kinase-like Gene Family AT3G02130 63.070 0.0 1333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Cca09g00293 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00293 - - gmx:100819882 1857.8