Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00282 ATGGCAACAGCGAGGACCGTGAAGGATGTTTCGCCTCACGATTTCGTGAAGGCTTATGCATCCCACCTAAAGCGTTCTGGAAAGATGGAGCTTCCTGAGTGGACAGATATTGTGAAAACTGCAAAATTTAAGGAGCTGGCTCCATATGATCCTGACTGGTATTATGTTAGAGCTGCCTCCATGGCAAGGAAGATCTATTTGAGAGGCGGTCTTGGTGTTGGTGCTTTCCAGAGGATCTACGGTGGAAGCAAGAGAAATGGAAGCCGTCCCCCACATTTCTGCAAGAGCAGCGGTGCTATTGCCAGACACATTCTGATACAATTGCAAAACATGAACATTGTTGAGATTGATACAAAAGGAGGTAGGAAAATCACTTCTAGTGGTCGAAGGGATCTGGACCAAGTTGCTGGGCGAATTGTGGTTGCCGCTTGA 432 0.4722 MATARTVKDVSPHDFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILIQLQNMNIVEIDTKGGRKITSSGRRDLDQVAGRIVVAA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00282 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Cca09g00282 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Cca09g00282 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Cca09g00282 143 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 3 141 - -
Cca09g00282 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
Cca09g00282 143 Gene3D - 1 142 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00282 Cca-Chr9 6637079 6639119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00282 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.943 8.20e-94 266