Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00271 ATGGCCAATGAAAGTGTTGAATTACCGCTGACCCCAGAAGTAACCAAGTCACCTGGGGTTGAAATAAAAAAGCATTCAGCTGGCAAAGCTAGTTCTGGAGCTAGTGTTGAAAAAAGTGTTCCCAATTATCTCAGAGCTTCCACTGGTTCTTGTCATGATATTTGTAAATATGGTGGGAAACATGCATTTGAATTGAAGGAAAGACGCTCTATACCTAATAGAGCTACAAGGAAACAGCTTCACCAAAGCTCAGAAGGCAGGGTTGGTGGGACAATGATGTCAGTTGCCAGGCTCAGTGCATCTGTAGATTCCAAGCCAACAAAGATGTCGACGGTCAAACTCAAGAAATCAGTTGATTCCAAGACCTGGATTTCTGATACCTCTGGCACTTATAAGCTGGAACTTCCAGCAAAAGCATTTGACAGCCAAAAAGAAATAGGGAATGAAGTTATGGTTAACAGGAACAAATCATCATTGACCAAGGTTAAACCATCACTCCTGAAGTCTCATACATCTCCATCATCAAGCCAAGAAATTTTGTCAATTAAGGAGGTCCGATCCCCATCAAAGTTAACTTCCAAGAAGGTGGGAACTACATCAACATCCAGGAAGGTGGAAGCTCCATCAAAATCATCTCCCAATAAGATGATGACATTAAAATCTACTTCTAATAAGGTGGGAAATCCATCAATATCAACTTCCAAGGTCAAAACTTCGTCAAAATCAGCTACCAATGTTGTGAAAACCTCATCACAATTATCTTCTCTCAAAGGTAAAGAAATGAAGTTGTCTGAAAAACGTGTGACTTCTTTAAATTCAAGCAGTGTCAGAAGGAAACAAATGTCTTCTATGAATTCCTCAGATGGTGTCGGTGGTCAAAGATTTAATAAGATCAAGATGGAAAAGGGGGTTGCCTCTTCCAAAGCAGCTTCAAAAAAACTGATGGCACCTTCAAATGCTTTTTTGTCCCCGAGACCTTCCCTTCTAAGAGTTGCAAGTATAAATTCAAGAAAGCATAAGAGCCTGAAAATTGCACCTCATCTTAAGAATCAGCGAACTGCTAGAAAGGTTGAACATGAGGAACACAACAACAATGAGGTAGAGGAAAAGACTCTGTATGTCATCAAGATGGAAGGTGAAAACAAAACTTTGCAATCTGATCAAAATGCAAGCTACGATGATGAGTCATACCTCCCTCAGTTGTCATCACCTAAGTCTTCAGTATCCTCAATTTCTCAATCCTTATCCCAAGGAGATCAAGAGGAGTCTGAATATACAACTAGTGAATTTGAGGATGATTCTTTTTCAGGAAGTCATGAAATTGAATGCATGGGAAATGAGGAGACATTGGAAGCTGAGATGAAAGTCAAGCCCAAAAAGGATGGGGTTGCATATTCCAAAGGCAAGGACAACCAAATGATAAAATTAAAGTTCAGAAGGGGAAAAGTGGTTGAAAATGAAACTCAGATAAGTAGTCCAAGGAGGCTTAAATTTCGGAGAACAAGAGTGCTGGTGGAGAAAGCCAATGCTAAGGGTGTTGCCCGGAAAAGCTTTGAAAGAAGAGATGAAGCCTGTGTTGACAGCAATGATGCTACAACTGGTCCAGAGAAGGTTGTTTTGAGACATCAAGATATGCAGGACAAAAAAGATGCACAGGGATTGCTAAATAATGTTATTGAGGAAGCAGCAAGTAAACTGGTAGAAGCTCGGAAGAGGACGGTTAAGGCATTGGTTGGTGCCTTTGAAACTGTGATCTCTCTTCATGAGAAAAAGCCTTCTGCAAGTGCAAACACAGTATTGCAGAAAGTAGAGATTGCATCATTCTCCCATCGCTTTGATAATTTTGTGCGAACCATAGCAGAACCCTCCGCGGTCACACTTGGAACCATGGCAGAATCCTCCGCCGCTGCTCCTCCGCCACCACCGGTGACCAAAAGCTGGGCTGACGAAGCCGACGAAGAAAGCAGCGCCGCCGCTACCACCGAGCCTGAAGCCTCCTCCTCCGTCAACGTCGACGCATTAACCATCGACGACAACAAGAAGAATCAGCCGAAGCTGTTGGACGACCCCGACGACTCCAACATCCAAGCGGTTACCTCCGGAGACACGCCGTACACGTCGGCGGCGACGTTCGAGGACCTTAACCTGTCGCCGGAGCTTCTGAAGGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGTAAGATCCAGGCGATAAGTTTGCCGATGATCCTGAGTCCGCCGCACCGGGACCTGATCGCGCAGGCGCACAACGGCTCCGGCAAGACCACGTGTTTTGTTCTTGGGATGCTGAGTCGTGTGGATCCGAAGGTGCAGGCTCCTCAGGCTCTCTGCATCTGCCCCACGAGGGAGCTTGCCATTCAGAACACTGAGGTGCTCCGCAAGATGGGCAAGTACACCGGGATTGCCTCTGAGTGTGCTGTGCCCATGGATAGCCGTGATGCCTTGCCCATCGCCAAAAGGGCGCCGATTATGGCGCAGGTCGTGATTGGGACTCCCGGGACCATTAAGAAGTGGATGAGCTTTAAGAAACTTGGGGCCACCAGGTTGAAGATTCTTGTTTTCGACGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATTGAAAGGGTCAATTCTAACTGTCAGGTTCTTTTGTTTTCTGCTACATTTAATGACACGGTCAAGAATTTTGTTTCAAGAACAGTCAAGAAGGATCACAATCAACTATTTGTAAAGAAAGAGGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCATTGTCCTGATGAACTTGCTAAGATTGAAATTATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTGCATAATGCTCTTGTTGATTTTGGCTATGAGGTTACATCTATACAAGGTGCTCTTGATCATGAACAGAGAGACAAAATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCAACAGATGTTCTTGCTCGTGGTTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAGTGAAACACACTGCTGAGTATAGCCGTGAACCTGAGCCGGATTGTGAAGTCTATTTGCACAGGGTTGGCAGAGCTGGGCGTTTTGGGAGGAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGCGAGGCTCATGTCAAAGATTGAGAACCATTTTGGCACTCATGTTGCTGAGGTGCGAGCACAAAGTGTTGAAGAATATAAAGCTGCTCTCAAGGAAGCCGGTTTACTGCAATGA 3357 0.4418 MANESVELPLTPEVTKSPGVEIKKHSAGKASSGASVEKSVPNYLRASTGSCHDICKYGGKHAFELKERRSIPNRATRKQLHQSSEGRVGGTMMSVARLSASVDSKPTKMSTVKLKKSVDSKTWISDTSGTYKLELPAKAFDSQKEIGNEVMVNRNKSSLTKVKPSLLKSHTSPSSSQEILSIKEVRSPSKLTSKKVGTTSTSRKVEAPSKSSPNKMMTLKSTSNKVGNPSISTSKVKTSSKSATNVVKTSSQLSSLKGKEMKLSEKRVTSLNSSSVRRKQMSSMNSSDGVGGQRFNKIKMEKGVASSKAASKKLMAPSNAFLSPRPSLLRVASINSRKHKSLKIAPHLKNQRTARKVEHEEHNNNEVEEKTLYVIKMEGENKTLQSDQNASYDDESYLPQLSSPKSSVSSISQSLSQGDQEESEYTTSEFEDDSFSGSHEIECMGNEETLEAEMKVKPKKDGVAYSKGKDNQMIKLKFRRGKVVENETQISSPRRLKFRRTRVLVEKANAKGVARKSFERRDEACVDSNDATTGPEKVVLRHQDMQDKKDAQGLLNNVIEEAASKLVEARKRTVKALVGAFETVISLHEKKPSASANTVLQKVEIASFSHRFDNFVRTIAEPSAVTLGTMAESSAAAPPPPPVTKSWADEADEESSAAATTEPEASSSVNVDALTIDDNKKNQPKLLDDPDDSNIQAVTSGDTPYTSAATFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNTEVLRKMGKYTGIASECAVPMDSRDALPIAKRAPIMAQVVIGTPGTIKKWMSFKKLGATRLKILVFDEADQMLAEDGFKDDSLRIMKEIERVNSNCQVLLFSATFNDTVKNFVSRTVKKDHNQLFVKKEELSLDAVKQYKVHCPDELAKIEIIKDYIFEIGENVGQTIIFVRTRNSAKMLHNALVDFGYEVTSIQGALDHEQRDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYSREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDERDARLMSKIENHFGTHVAEVRAQSVEEYKAALKEAGLLQ 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00271 1118 MobiDBLite consensus disorder prediction 340 370 - -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 1 38 - -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 351 370 - -
Cca09g00271 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1081 IPR027417 -
Cca09g00271 1118 CDD DEADc_DDX19_DDX25 716 915 - -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 271 292 - -
Cca09g00271 1118 CDD SF2_C_DEAD 932 1076 - -
Cca09g00271 1118 Pfam Helicase conserved C-terminal domain 945 1067 IPR001650 -
Cca09g00271 1118 SMART helicmild6 974 1067 IPR001650 -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 384 423 - -
Cca09g00271 1118 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 948 1107 IPR001650 -
Cca09g00271 1118 Pfam DEAD/DEAH box helicase 735 907 IPR011545 GO:0003676|GO:0005524
Cca09g00271 1118 PANTHER DEAD-BOX HELICASE DBP80 688 1097 - -
Cca09g00271 1118 Gene3D - 929 1111 IPR027417 -
Cca09g00271 1118 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 743 919 IPR014001 -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 271 293 - -
Cca09g00271 1118 SMART CaM_binding_2 472 586 IPR012417 GO:0005516
Cca09g00271 1118 MobiDBLite consensus disorder prediction 384 439 - -
Cca09g00271 1118 Pfam Plant calmodulin-binding domain 475 586 IPR012417 GO:0005516
Cca09g00271 1118 Coils Coil 350 370 - -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 659 677 - -
Cca09g00271 1118 Gene3D - 688 926 IPR027417 -
Cca09g00271 1118 MobiDBLite consensus disorder prediction 630 701 - -
Cca09g00271 1118 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 709 738 IPR014014 GO:0003724
Cca09g00271 1118 MobiDBLite consensus disorder prediction 161 243 - -
Cca09g00271 1118 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 688 1097 - -
Cca09g00271 1118 SMART ultradead3 729 935 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00271 Cca-Chr9 6441194 6453276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00271 710 1099 Eukaryotic Initiation Factors Gene Family AT1G72730 36.962 2.66e-67 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00271 K18655 - gmx:100789388 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00271 09 6441194 6453276 Cca07g02212 07 50352947 50365512 PCT