Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00269 ATGTGGAACTTTGCATCAAATTGCATTGCTGGAACTGTGGGACTGAAAAATGATTCTTCAAAGCATAATCATTCTGCTTCGGAATGTTCTGATGATGAGACTTCTATTATAGGCAGAGAGGAAGGACTGGAATGCCCGATATGTTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGCATCCTCGGACTGCAATGGGCTGTTGTGAAATTTCCAACGCTGCCTGTTCAACTTCCCCTTTTTATCTCCTGTCCATGGTGCAACCTTCTATCTTTTCGTTTAGTTTACAGGGGAAATCTTAAATTCCCTCGCAAAAACTATTTCCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGTGAAATCATCACATTCACCTTTCTGTGGGGATAATCAACAACACTCCATTAAAGACAATTTAACCATGGGATGCCAAGTAAGCCATGGAAACCTTCGGAGGGGGCAAGTCCGCCATCCAGAAACATCAAGTTCCAACCAATATCATGGTAATACTGGTGATCACATCAATACGGAAAGACTTCATGTTTATCTTCGGAAGTCACTGGTCTTCTTTGTCCAGTTGACGGCTAAGTTCCCATTGGTCATTATATTTCTATTAATCATCCTATATGCAATACCAGCCAGTGCAGCCATTTTGGCTCTGTATGTACTTGTTACAATTCTGTTTGCCCTCCCTTCATTTCTCATATTGTACTTCTCATATCCTAGTTTGGACTGGCTTGTCAGAGAAATCATCACTTGA 801 0.4082 MWNFASNCIAGTVGLKNDSSKHNHSASECSDDETSIIGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYFLLWMVESMNGDRVKSSHSPFCGDNQQHSIKDNLTMGCQVSHGNLRRGQVRHPETSSSNQYHGNTGDHINTERLHVYLRKSLVFFVQLTAKFPLVIIFLLIILYAIPASAAILALYVLVTILFALPSFLILYFSYPSLDWLVREIIT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00269 266 SUPERFAMILY RING/U-box 40 103 - -
Cca09g00269 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
Cca09g00269 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cca09g00269 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Cca09g00269 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
Cca09g00269 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 138 IPR013083 -
Cca09g00269 266 PANTHER LIGASE, PUTATIVE-RELATED 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00269 Cca-Chr9 6386592 6390031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00269 1 266 Miscellaneous Gene Families AT3G29270 65.169 6.96e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00269 - - gmx:100809368 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00269 09 6386592 6390031 Cca09g00269 09 6386592 6390031 ECH
Cca07g02212 07 50352947 50365512 Cca09g00269 09 6386592 6390031 ECH