LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00268	ATGAAGGTGTCTGCTCTTGGGAACTTCCAGGACTCTCTCAGGGCTTTGCTGTATTTGGTGAGGTTCCCCGTTGGCGCCAAGTCGCTTGTGAATCACGAGTGGTGGGTGCCCAGAGGCGTTTATATCAACGGCCGCGCCATGGAGATGACCAGCATTTTGGGTCCCTTTCTCCACGTCAGTGCTCTTCCTGATCAGGCCTTTTTCAAGGGCGAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCGGCTGATTTGTTATCTTCATTTACCACTATTAAAACTGTCATGAACAACTTATATGATGGCCTATCTGAAGTACTCCTCATCCTCCTTAAAAGTGCCGATACTCGTGAAAATGTACTTGAGTATCTTGCAAAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGATACTATTACATGTGCAAGTTCAGGAACGTTTGTAACTCTGAGTGCTGTCATGCTTCGACTATGTGAACCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTACTCAAACCGATTGCAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTTAATAGTAAAAACCCAGCTACAACTGGGGCAACCACTCAATACAATGATGATCAGAAACGCTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGTGAGCTCTCAAATGAAAATTCTGCACGTGGTGAAAAGACGAAATATTCATTTATTTGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGTCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATACTCTGTCCACACTTAAAGCCATGCAGGAGCGATCACCCTCTCGTCAGGCCGAAATGGATATTAATCGACTTGAGAAAGAAATGGAGTCATACTCACAGGAAAAACTATGTTATGAAGCTCAGATATTGAGGGATAACACACTTATCCAGAATGCGCTTTCCTTCTACCggttgatgattgtttggttggttggcttagttggtGGATTTAAGATGCCTTTACCACCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCACGGATTCCAAAGGCCTTGGATGGAGTTGTGCTGGATGAGTTTATGAATTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATACCTTAGAGCTAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGCAGGAGTGGTTCAACTGCTACAGCCACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTAAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAATTTAACATCCGCCATAATATTGCCGAACTCCTTGAATACCTGTGGCAAGTTCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAGAAGGGTGTCTATCTGAATTTCTTAAACTTCCTGATTAATGATAGTATTTATCTTCTTGATGAGAGTCTGAACAAAATTCTTGAGATAAAAGAGTTGGAGGCTGAGATGTCAAATACAGCTGAGTGGGAGCGTCGTCCAGTTCAAGAGAGGCAGGAGAGAACCCGGTTATTCCATTCTCAAGAAAATATTATCCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTATTGCTCCATTCCTACTCCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTTTGCTGCAATTGGTGGGTCCCCAAAGAAGATCGCTCAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTATTAAAACAGATTGTACACATATATGTTCATCTGGCTAGGGGTGACACGAATTCCATCTTCCCGTCTGCCATCTCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCAGATGTCCTTCACAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAAGCCATGGATGCTGAAGCTACTCTAGGGGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCACCTTCTTAGTGATAGTACTGATCCGTTCAACCGTTCTCATCTTACTGTGGATATGTTGATTCCCGATGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTGAGGTCTCAGGAAATGAAGAAACACGAAGGACTAAACCTGCAGAGTACCAAGGCCACTATTCAGCCTACAAATGGAGAAATGTTGATTGATTAG	2496	0.4143	MKVSALGNFQDSLRALLYLVRFPVGAKSLVNHEWWVPRGVYINGRAMEMTSILGPFLHVSALPDQAFFKGEPDVGQQCFSDASTRRPADLLSSFTTIKTVMNNLYDGLSEVLLILLKSADTRENVLEYLAKVININASRAHIQVDTITCASSGTFVTLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLQLSGLTALHASSEEVTEWLNSKNPATTGATTQYNDDQKRLQQSQEASSSGSNNAGELSNENSARGEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQERSPSRQAEMDINRLEKEMESYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEIKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIIAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPSAISKDGRSYNDQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPDDELKARIEEFVRSQEMKKHEGLNLQSTKATIQPTNGEMLID	831

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00268	831	MobiDBLite	consensus disorder prediction	211	253	-	-
	Cca09g00268	831	SUPERFAMILY	RING/U-box	726	806	-	-
	Cca09g00268	831	Coils	Coil	312	339	-	-
	Cca09g00268	831	PANTHER	UBIQUITINATION FACTOR E4	2	808	IPR045132	GO:0000151\|GO:0030433\|GO:0034450
	Cca09g00268	831	Pfam	Ubiquitin elongating factor core	53	717	IPR019474	GO:0000151\|GO:0006511\|GO:0016567\|GO:0034450
	Cca09g00268	831	CDD	RING-Ubox_UBE4A	736	804	-	-
	Cca09g00268	831	ProSiteProfiles	U-box domain profile.	733	807	IPR003613	GO:0004842\|GO:0016567
	Cca09g00268	831	Pfam	U-box domain	734	805	IPR003613	GO:0004842\|GO:0016567
	Cca09g00268	831	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	733	812	IPR013083	-
	Cca09g00268	831	PANTHER	-	2	808	-	-
	Cca09g00268	831	SMART	Ubox_2	737	800	IPR003613	GO:0004842\|GO:0016567

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00268	1	831	U-box Gene Family	AT5G15400	78.125	0.0	1345

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00268	K10597		-	gmx:100811444	1554.65

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g00268	09	6346443	6356883	Cca09g00268	09	6346443	6356883	ECH