Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g00260 | ATGGGTTGCATTAACTCGAAGAATGTGGTTGCCAGAGCCTATTCTCCGTCGCCGGGGGAGATGGTCATTTCGGAGGTGGTTCCGGCTTCCTCCAAGGGCCATTCGGCGTGGCTGGGACCCGAATCCAAAAGGGGTTCAGAGGATAAGTTCAAGAAGCATGCTTCAAGAAAGAGTAATGGGTCTTCTTTCGGCTTCAGGCTTGGGTTGGCTCAGAGGTATGCAGAGGCTGAACAGAATGCAGCTGGTTGGCCTCCTTGGCTCACTGGTGTCGCAGCTGAAGCCATTCAAGGGTGGATCCCCCTCAAAGCTGATTCCTTTCAAAAGCTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCTCGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTACAACCCGAGAGCATTAGGTTCATGGCACGAGAAATAACAATTCTCCGCAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGTATGTCAACCAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCTGAATCACAGATAAAATGTTACATGAGGCAGTTATTAAGTGGACTTGAGCATTGTCATATGCGTGGTATCATGCATCGAGACATCAAAGTATCAAATATCTTATTGAACAATGAAGGTGTTCTTAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAACAAACATCATTTGACAAGTCGTGTTGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCGACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTTGGTTGTGTATTTGCTGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGAATAAGCTTCCTCATTCAACAATGTTTAAGCCTCAGACTAATTATGAAAGCTCTTTACGGGAGAGGTGTGCAGATTTTCCTGTAATTGCTGTAGACCTACTTGAGACTTTATTGTCCATTGACCCAAGCAACAGGGGGACAGCCTCCTCTGCCCTAATGTCTGAGTATTTCAATGTCAAGCCATATGCTTGTAGCCCATCAAGCCTGCCAAAATATCCACCTAGCAAAGAAATGGATGTCAAATGTCAGGAAGATTCTTCCAGGAAAAAGAGTGGAGGTAAAATTAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGAGTCCCTAAGGTTTTGCAAGATCCAAATAACTTTGGCAAATCAATTTCAAAAGAGAACATTCCTCAAAATGCTCGTAGAGATGATGGAAATGCACATCTTACAAAGGGAAAAGGAGGAGCCATGCACACAAAGCCTACAATGGATGCTATGTCTGAGACCTCCCAAATCATGAATCTTGCTAATGGTAATGGCTATAGTGTACCAGTACACCCAGGATCTACTAATGACTTTACATGGGCAAAAAGGAGAAAACAAGATGCATCATCCACACTATCAGATGGCTCAAGAAGTAAAATTAGTGCATTGGATCCGCACTTTGCAAAAGGCACATATGACTTAACCAATCAAAGGGTGACAATGGATTTTGACCCCGCAGAACTGATAAATGCTCAGGCCAACAGAGACGAACAATGGAATGAAAATGGTATAAGGCGCGCAGCTCGAAAATCAAGATTTGGAAGAGACAAATGA | 1791 | 0.4327 | MGCINSKNVVARAYSPSPGEMVISEVVPASSKGHSAWLGPESKRGSEDKFKKHASRKSNGSSFGFRLGLAQRYAEAEQNAAGWPPWLTGVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRMSTSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTNNKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPHSTMFKPQTNYESSLRERCADFPVIAVDLLETLLSIDPSNRGTASSALMSEYFNVKPYACSPSSLPKYPPSKEMDVKCQEDSSRKKSGGKIREVATSRRQQRRVPKVLQDPNNFGKSISKENIPQNARRDDGNAHLTKGKGGAMHTKPTMDAMSETSQIMNLANGNGYSVPVHPGSTNDFTWAKRRKQDASSTLSDGSRSKISALDPHFAKGTYDLTNQRVTMDFDPAELINAQANRDEQWNENGIRRAARKSRFGRDK | 596 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g00260 | 596 | MobiDBLite | consensus disorder prediction | 578 | 596 | - | - | |
Cca09g00260 | 596 | Gene3D | Phosphorylase Kinase; domain 1 | 93 | 188 | - | - | |
Cca09g00260 | 596 | MobiDBLite | consensus disorder prediction | 32 | 59 | - | - | |
Cca09g00260 | 596 | PANTHER | CYCLIN-DEPENDENT KINASE | 30 | 590 | - | - | |
Cca09g00260 | 596 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524 | |
Cca09g00260 | 596 | MobiDBLite | consensus disorder prediction | 401 | 483 | - | - | |
Cca09g00260 | 596 | SMART | serkin_6 | 106 | 390 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca09g00260 | 596 | ProSiteProfiles | Protein kinase domain profile. | 106 | 390 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca09g00260 | 596 | MobiDBLite | consensus disorder prediction | 410 | 442 | - | - | |
Cca09g00260 | 596 | Pfam | Protein kinase domain | 106 | 390 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca09g00260 | 596 | PANTHER | CELL DIVISION PROTEIN KINASE | 30 | 590 | - | - | |
Cca09g00260 | 596 | CDD | STKc_CDK9_like | 106 | 390 | - | - | |
Cca09g00260 | 596 | SUPERFAMILY | Protein kinase-like (PK-like) | 100 | 392 | IPR011009 | - | |
Cca09g00260 | 596 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Cca09g00260 | 596 | Gene3D | Transferase(Phosphotransferase) domain 1 | 189 | 429 | - | - | |
Cca09g00260 | 596 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 226 | 238 | IPR008271 | GO:0004672|GO:0006468 | |
Cca09g00260 | 596 | MobiDBLite | consensus disorder prediction | 573 | 596 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g00260 | Cca-Chr9 | 6254400 | 6260195 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g00260 | 98 | 444 | Core Cell Cycle Gene Families | AT5G10270 | 45.730 | 5.10e-109 | 335 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CRK7-CDK9 | Cca09g00260 | Pkinase | 2e-70 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g00260 | - | - | gmx:100790917 | 965.296 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca09g00260 | 09 | 6254400 | 6260195 | Cca09g00260 | 09 | 6254400 | 6260195 | ECH | |
Cca07g02199 | 07 | 50199574 | 50205661 | Cca09g00260 | 09 | 6254400 | 6260195 | ECH |