Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00260 ATGGGTTGCATTAACTCGAAGAATGTGGTTGCCAGAGCCTATTCTCCGTCGCCGGGGGAGATGGTCATTTCGGAGGTGGTTCCGGCTTCCTCCAAGGGCCATTCGGCGTGGCTGGGACCCGAATCCAAAAGGGGTTCAGAGGATAAGTTCAAGAAGCATGCTTCAAGAAAGAGTAATGGGTCTTCTTTCGGCTTCAGGCTTGGGTTGGCTCAGAGGTATGCAGAGGCTGAACAGAATGCAGCTGGTTGGCCTCCTTGGCTCACTGGTGTCGCAGCTGAAGCCATTCAAGGGTGGATCCCCCTCAAAGCTGATTCCTTTCAAAAGCTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCTCGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTACAACCCGAGAGCATTAGGTTCATGGCACGAGAAATAACAATTCTCCGCAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGTATGTCAACCAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCTGAATCACAGATAAAATGTTACATGAGGCAGTTATTAAGTGGACTTGAGCATTGTCATATGCGTGGTATCATGCATCGAGACATCAAAGTATCAAATATCTTATTGAACAATGAAGGTGTTCTTAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAACAAACATCATTTGACAAGTCGTGTTGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCGACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTTGGTTGTGTATTTGCTGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGAATAAGCTTCCTCATTCAACAATGTTTAAGCCTCAGACTAATTATGAAAGCTCTTTACGGGAGAGGTGTGCAGATTTTCCTGTAATTGCTGTAGACCTACTTGAGACTTTATTGTCCATTGACCCAAGCAACAGGGGGACAGCCTCCTCTGCCCTAATGTCTGAGTATTTCAATGTCAAGCCATATGCTTGTAGCCCATCAAGCCTGCCAAAATATCCACCTAGCAAAGAAATGGATGTCAAATGTCAGGAAGATTCTTCCAGGAAAAAGAGTGGAGGTAAAATTAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGAGTCCCTAAGGTTTTGCAAGATCCAAATAACTTTGGCAAATCAATTTCAAAAGAGAACATTCCTCAAAATGCTCGTAGAGATGATGGAAATGCACATCTTACAAAGGGAAAAGGAGGAGCCATGCACACAAAGCCTACAATGGATGCTATGTCTGAGACCTCCCAAATCATGAATCTTGCTAATGGTAATGGCTATAGTGTACCAGTACACCCAGGATCTACTAATGACTTTACATGGGCAAAAAGGAGAAAACAAGATGCATCATCCACACTATCAGATGGCTCAAGAAGTAAAATTAGTGCATTGGATCCGCACTTTGCAAAAGGCACATATGACTTAACCAATCAAAGGGTGACAATGGATTTTGACCCCGCAGAACTGATAAATGCTCAGGCCAACAGAGACGAACAATGGAATGAAAATGGTATAAGGCGCGCAGCTCGAAAATCAAGATTTGGAAGAGACAAATGA 1791 0.4327 MGCINSKNVVARAYSPSPGEMVISEVVPASSKGHSAWLGPESKRGSEDKFKKHASRKSNGSSFGFRLGLAQRYAEAEQNAAGWPPWLTGVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRMSTSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTNNKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPHSTMFKPQTNYESSLRERCADFPVIAVDLLETLLSIDPSNRGTASSALMSEYFNVKPYACSPSSLPKYPPSKEMDVKCQEDSSRKKSGGKIREVATSRRQQRRVPKVLQDPNNFGKSISKENIPQNARRDDGNAHLTKGKGGAMHTKPTMDAMSETSQIMNLANGNGYSVPVHPGSTNDFTWAKRRKQDASSTLSDGSRSKISALDPHFAKGTYDLTNQRVTMDFDPAELINAQANRDEQWNENGIRRAARKSRFGRDK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00260 596 MobiDBLite consensus disorder prediction 578 596 - -
Cca09g00260 596 Gene3D Phosphorylase Kinase; domain 1 93 188 - -
Cca09g00260 596 MobiDBLite consensus disorder prediction 32 59 - -
Cca09g00260 596 PANTHER CYCLIN-DEPENDENT KINASE 30 590 - -
Cca09g00260 596 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Cca09g00260 596 MobiDBLite consensus disorder prediction 401 483 - -
Cca09g00260 596 SMART serkin_6 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00260 596 ProSiteProfiles Protein kinase domain profile. 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00260 596 MobiDBLite consensus disorder prediction 410 442 - -
Cca09g00260 596 Pfam Protein kinase domain 106 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00260 596 PANTHER CELL DIVISION PROTEIN KINASE 30 590 - -
Cca09g00260 596 CDD STKc_CDK9_like 106 390 - -
Cca09g00260 596 SUPERFAMILY Protein kinase-like (PK-like) 100 392 IPR011009 -
Cca09g00260 596 MobiDBLite consensus disorder prediction 41 55 - -
Cca09g00260 596 Gene3D Transferase(Phosphotransferase) domain 1 189 429 - -
Cca09g00260 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Cca09g00260 596 MobiDBLite consensus disorder prediction 573 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00260 Cca-Chr9 6254400 6260195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00260 98 444 Core Cell Cycle Gene Families AT5G10270 45.730 5.10e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca09g00260 Pkinase 2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00260 - - gmx:100790917 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00260 09 6254400 6260195 Cca09g00260 09 6254400 6260195 ECH
Cca07g02199 07 50199574 50205661 Cca09g00260 09 6254400 6260195 ECH