Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00259 ATGCAGGTAGCTCCCTATGTTTTGTTAATTGGTCAGCAGCATCGAACGAACAAACAACAATGCTCTCTTCAACCCTCCTTCACAATCCACCACTCTAGCCACCCCTCTTCCGCTTCCGTTATAAAAATGGACAGATCTACTGGCCGTAGTGGTGGTGGAAGCGTAGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTGCTGACTGGTCATAAAGTTGCCATAAAGATTCTTAACCGCCACAAGATAAAAAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTGAGATTGTTTATGCATCATCACATTATACGACTTTATGAGGTTGTAGAAACCCCAACAGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTAGGCTGCAAGAGGATGAAGCCCGCCATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGGGACCTGAAGCCTGAGAATTTACTTTTGGACTCAAAATTTAATATCAAAATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGGGTGGGATATACACTCTCCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTTGTGGATCCCATGAAGAGGATGACCATACCTGAGATACGTCAACACCCATGGTTTCAAGTTCGTCTGCCGCGTTACTTAGCAGTGCCACCACCAGATACTCTGCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAAGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTCGCAACAGGATACAAAATGAGGGTACTGTAACATACTATTTGTTACTGGACAACCGGTTTCGTGTTTCTACTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGGATTCTGGTTTCAACCATATGCATTCCAACGAAGTTGCTTCTCCAATTGTTGGACACCACAGTACAGGATATATGGATTATCAAGGAGTAGGAATGCGGCAGCAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTACAGTCTCGAGCCCAACCGCGTGAAATAATGACTGAGGTCCTTAAAGCTCTTCAAGGATTAAATGTTTGCTGGAAGAAGATTGGACATTATAACATGAAATGCAGATGGGTTGCTAGCATTCCTGGTCATCATGAAATGGTTAACTATTCTTTGGACTGTAATCGTTTCTTTGAAACTGATACCAGATTTATTGAAAATGAAGTTGTTTCTAAGTCAAGTGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCGTGAGGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGTCCGCAGTTTCTGTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1671 0.4159 MQVAPYVLLIGQQHRTNKQQCSLQPSFTIHHSSHPSSASVIKMDRSTGRSGGGSVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRHKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPDTLQQAKKIDEEILQEVVNMGFDRNQLVESLRNRIQNEGTVTYYLLLDNRFRVSTGYLGAEFQETMDSGFNHMHSNEVASPIVGHHSTGYMDYQGVGMRQQFPVERKWALGLQSRAQPREIMTEVLKALQGLNVCWKKIGHYNMKCRWVASIPGHHEMVNYSLDCNRFFETDTRFIENEVVSKSSVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00259 556 PANTHER SERINE/THREONINE KINASE 51 555 - -
Cca09g00259 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Cca09g00259 556 SUPERFAMILY Protein kinase-like (PK-like) 59 327 IPR011009 -
Cca09g00259 556 Pfam Protein kinase domain 62 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00259 556 CDD STKc_AMPK_alpha 59 314 - -
Cca09g00259 556 CDD UBA_SnRK1_plant 336 376 - -
Cca09g00259 556 SUPERFAMILY UBA-like 325 373 IPR009060 GO:0005515
Cca09g00259 556 Gene3D Transferase(Phosphotransferase) domain 1 54 396 - -
Cca09g00259 556 ProSiteProfiles Protein kinase domain profile. 62 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00259 556 Pfam Kinase associated domain 1 513 555 IPR001772 -
Cca09g00259 556 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 335 375 IPR015940 -
Cca09g00259 556 SMART serkin_6 62 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00259 556 CDD AMPKA_C 432 553 - -
Cca09g00259 556 SUPERFAMILY KA1-like 371 555 IPR028375 -
Cca09g00259 556 SMART uba_6 337 374 IPR015940 -
Cca09g00259 556 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 51 555 - -
Cca09g00259 556 Gene3D Kinase associated domain 1, KA1 438 554 - -
Cca09g00259 556 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Cca09g00259 556 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 507 555 IPR001772 -
Cca09g00259 556 Pfam UBA/TS-N domain 336 372 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00259 Cca-Chr9 6237858 6250827 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00259 62 314 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 6.49e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Cca09g00259 Pkinase 4.9e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00259 K07198 - gmx:547544 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00259 09 6237858 6250827 Cca09g00259 09 6237858 6250827 ECH