Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00258 ATGGCAAGGAAGAGAAAGGCTACTACTAGTGGTGAAGTAGTGGAAGAGAGAAACCTAGGTGAGGGAACCATGGCTTGGGATGATATGATGAAACAAGCTGCAGCACTTGGAGGAGTCCAAAGAGCCAGGAAGAGGTTTGTTGGTGTGAGGCAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACCATTCAGAAGATAAGAGTGTGGCTAGGAACTTTTGACACTGCTGAAGAAGCTGCAAGAGCCTATGATGAAGCTGCATGCTTGCTTAGAGGTGCCAACACAAGGACAAACTTCTGGCCTTGTTCTCAATCATCTTCAAGTCCAGCTCTTTCTTCAAAGATCACTAATCTTCTCCTTCAAAGGCTTAAAGAAAGGaacaacaacaacaacaacaCTTGCTTCTCTTCCTCTCTCGTCAACCACCCACAAATGCAACAACAAGTTGACTATTCTTATGCATATGAAGCAGGATCAACACAATTCTCAATTGATCAATTCACTGATTTCCTCAATGACCCTGAAGACTACAGCACAAGCAACAATGACTACATCAACAACAGTGCACAAATTGATTACATTACTAGCAGCTTTGAGTCATGTTTGACTGAGAAAGATGTGGAGACAGAAATGGATGTGCAATACAAATCCATCGATGTGACAACACCACAGACTTCAAGCAATGACAGCAATTCAGGAGTGGAAGAAGAGAGAGAGGAGGACAGTGACACTGATTTGGGAGGCCAAAGCGCTGATTCGGATGTCCATGATTTTAGGTTTTTGGACAACATTGCTCCACCTAACTACTATTCTCCCTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGAGCCTGAGAACTATGGTGGTGATGAGCCTTCAATGCTTAGAGCTGTCATGAAGAGAATGACATATGAGAGAAAGTTCTCAGCTTCTCTCTATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTGGAATCAGGAAACATGAAGAAGGGAAGAGGACTAGCTGATCAATTAACCAACCTCAAAATGGCTTGCAGCAAAAACAAAGTTGAGAAGAATAACAAGGAGGAGAAAGAGTACATGGAAACAATGGATAGGAAACATGAAGAACACCAACAAACATCAACTGACATGGATTCATCTAGTGTTGATGGGGAACTGTTGCTTTGGAATTCACTAGATCTTCCTCCTATTTGCTTTGTTAACTTGCTAGAAAACGGTTCATTCAATTAG 1251 0.4205 MARKRKATTSGEVVEERNLGEGTMAWDDMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSSPALSSKITNLLLQRLKERNNNNNNTCFSSSLVNHPQMQQQVDYSYAYEAGSTQFSIDQFTDFLNDPEDYSTSNNDYINNSAQIDYITSSFESCLTEKDVETEMDVQYKSIDVTTPQTSSNDSNSGVEEEREEDSDTDLGGQSADSDVHDFRFLDNIAPPNYYSPFEMAEEMEEPVEPENYGGDEPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKKGRGLADQLTNLKMACSKNKVEKNNKEEKEYMETMDRKHEEHQQTSTDMDSSSVDGELLLWNSLDLPPICFVNLLENGSFN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00258 416 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Cca09g00258 416 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 350 - -
Cca09g00258 416 MobiDBLite consensus disorder prediction 217 233 - -
Cca09g00258 416 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Cca09g00258 416 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Cca09g00258 416 MobiDBLite consensus disorder prediction 357 387 - -
Cca09g00258 416 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Cca09g00258 416 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 10 350 - -
Cca09g00258 416 MobiDBLite consensus disorder prediction 217 254 - -
Cca09g00258 416 Coils Coil 353 373 - -
Cca09g00258 416 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Cca09g00258 416 MobiDBLite consensus disorder prediction 357 381 - -
Cca09g00258 416 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Cca09g00258 416 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Cca09g00258 416 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00258 Cca-Chr9 6234958 6236507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00258 43 121 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.19e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca09g00258 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00258 K09286 - gmx:100786711 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00258 09 6234958 6236507 Cca09g00258 09 6234958 6236507 ECH