Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00256 ATGCATCATCACATTATACGACTTTATGAGGTTGTAGAAACCCCAACAGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTAGGCTGCAAGAGGATGAAGCCCGCCATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGGGACCTGAAGCCTGAGAATTTACTTTTGGACTCAAAATTTAATATCAAAATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAGACAAGTTGTGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACAAACAGACATATATGTTGTTATGGACCTCCACGTCATCTCCGCCCACCGCAGAGAGTGACGAAGCGAAAAAGTGCACTGCTGCTGGTGCTCTTAATGGAGAGCAAAAGAAGCAAAAAGTTTCTGAAATAAAGTCTGGAATTGATGAAGCAGAGGCTTTGATTCGAAAAATGGACCTCGAGGCAAGAAGTTTGCAGCCAAACGTCAAGGGTGTACTTCTTGCTAAGTTGCGGGAGTATAAATCTGATCTAAACAATCTTAAAAGTGAAATCAAGAAAATTGTATCTGGTAACTTAAATCCTTCTGCACGAGATGAATTGTTGGAATCAGGCATGGCAGATGCTATGACGGCATCTGCTGATCAGAGGACAAGATTAATGACGTCAACTGACAGGTTGAATAAAACCAGTGACAGAGTTAAGGAAAGTAGGAGAACAATGTTGGAAACAGAAGAGCTCGGTGTCTCCATTCTTCATGATTTGCATTCACAGCGACAATCTCTATTGCATGCGCATAACACGCTTCATGGAGTTGATGATAACATTGGCAAGAGCAAGAAAATTTTGACCAACATGTCAAGAAGGATGAACAAGAATAAATGGATTATTGGTGGCATTGTTTTGGTCCTGGTTATTGCCATCGTCTTGATCCTGTACTTCAAACTTTCTAAATAG 1113 0.4088 MHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENKQTYMLLWTSTSSPPTAESDEAKKCTAAGALNGEQKKQKVSEIKSGIDEAEALIRKMDLEARSLQPNVKGVLLAKLREYKSDLNNLKSEIKKIVSGNLNPSARDELLESGMADAMTASADQRTRLMTSTDRLNKTSDRVKESRRTMLETEELGVSILHDLHSQRQSLLHAHNTLHGVDDNIGKSKKILTNMSRRMNKNKWIIGGIVLVLVIAIVLILYFKLSK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00256 370 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00256 370 Pfam Protein kinase domain 2 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00256 370 SUPERFAMILY Protein kinase-like (PK-like) 2 162 IPR011009 -
Cca09g00256 370 Gene3D - 168 245 IPR038407 -
Cca09g00256 370 Gene3D Phosphorylase Kinase; domain 1 1 29 - -
Cca09g00256 370 SMART serkin_6 2 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00256 370 Pfam Vesicle transport v-SNARE protein N-terminus 170 239 IPR007705 GO:0006886|GO:0016020
Cca09g00256 370 Gene3D - 266 346 - -
Cca09g00256 370 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 167 369 - -
Cca09g00256 370 SUPERFAMILY SNARE fusion complex 279 338 - -
Cca09g00256 370 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 167 369 - -
Cca09g00256 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 64 76 IPR008271 GO:0004672|GO:0006468
Cca09g00256 370 CDD SNARE_Vti1 276 337 - -
Cca09g00256 370 Coils Coil 216 243 - -
Cca09g00256 370 Pfam Snare region anchored in the vesicle membrane C-terminus 277 342 - -
Cca09g00256 370 SUPERFAMILY t-snare proteins 169 241 IPR010989 GO:0016020|GO:0016192
Cca09g00256 370 Gene3D Transferase(Phosphotransferase) domain 1 30 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00256 Cca-Chr9 6171065 6178683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00256 2 162 CBL-interacting serine-threonine protein kinases AT2G26980 55.030 6.15e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Cca09g00256 Pkinase 5.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00256 K08493 - gmx:100815385 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00256 09 6171065 6178683 Cca09g00256 09 6171065 6178683 ECH
Cca07g02193 07 50121504 50124750 Cca09g00256 09 6171065 6178683 ECH