Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00253 ATGGCAGCAGCTTTTGTATTAACTGTGTCACAAGACGGAACAGGACAGTACCGGACGGTGCAGGAGGCCATAGACGCTGTGCCGCTCGGCAACACTCGCCGGACGCTCATTCGGGTGTCGCCGGGAACCTACCGGCAGCCCCTCCACGTGGCAAAGACTAAGAACTTCATCACCCTCCTTGGCCTTCGCCCTGAGGACACTCTTCTCACTTGGAACAACACTGCCACCAATATCCATCACCATAAGGATGCTAAGGTGATAGGGACTGGGACCTTTGGTTGTGGCAGCATCATTGTGGAAGGGGGGGACTTTATTGCTGAGAATATTACCTTTGAGAATTCTTCCCCTGAGGGTTCAGGGCAAGCAGTGGCAGTTAGAGTAACAGCAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACTCTGTATTTACATTATGGGAAACAATATTTGAGAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAACATTGTCACATCCATTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAACTCTCCACAGGAAACAACTGGTTATGTATTCCTGAGATGTGTTATCACAGGTAATGGGGGAACTTCATATGCATATCTGGGACGACCATGGAGACCTTTTGCAAGAGTGGTCTTTGCATTCACTTATATGGATCACTGTATAAAGCCTGTTGGGTGGAATAATTGGGGGAAAGTTGAGAATGAAAGAACTGCTTGCTTCTATGAATACAGGTGTTTTGGAGGAGGTTTCTGTCCATCCCAACGAGTAAAATGGGCAAGAGAATTAAGGGATGAAGGAGCTGAGCAGTTTCTGATGCATAGCTTTATTGACCCTGAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGCCTTAAGGATTCCATATTCTGCTTAG 954 0.4665 MAAAFVLTVSQDGTGQYRTVQEAIDAVPLGNTRRTLIRVSPGTYRQPLHVAKTKNFITLLGLRPEDTLLTWNNTATNIHHHKDAKVIGTGTFGCGSIIVEGGDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRNSPQETTGYVFLRCVITGNGGTSYAYLGRPWRPFARVVFAFTYMDHCIKPVGWNNWGKVENERTACFYEYRCFGGGFCPSQRVKWARELRDEGAEQFLMHSFIDPESERPWLAQRMALRIPYSA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00253 317 PANTHER PECTINESTERASE 3 316 - -
Cca09g00253 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 316 - -
Cca09g00253 317 Gene3D - 3 310 IPR012334 -
Cca09g00253 317 SUPERFAMILY Pectin lyase-like 2 304 IPR011050 -
Cca09g00253 317 Pfam Pectinesterase 8 297 IPR000070 GO:0030599|GO:0042545
Cca09g00253 317 ProSitePatterns Pectinesterase signature 2. 160 169 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00253 Cca-Chr9 6129912 6135417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00253 6 310 Carbohydrate Esterase AT5G47500 37.061 9.07e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00253 K01051 - gmx:100810259 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00253 09 6129912 6135417 Cca09g00253 09 6129912 6135417 ECH