Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00242 ATGGAAGGATCCGTATGTGTACGTAAAGGTGCATGGAGTGAAGTAGAAGATGACCTTCTCAGGGCGTGTGTGAGACAATATGGGGAAGGAAAATGGCACTTGGTGCCTACAAGAGCGGGCTTGAACCGGTGCCGCAAGAGCTGCAGACAGAGGTGGTTGAATTATCTAAAACCAGATATCAAGAGGGGAGAGTTCGCTGAGGACGAAGTTGATATCATGTTAAGATTGCATAAACTTTTGGGTAACAGATGGTCCCTGATTGCAGGAAGACTTCCTGGAAGAACACCAAATGATGTGAAAAACTACTGGAACACCTACATTCGCAGGAGAGCATGCTCTCATAAGGTGGTAAGCAATGAAAAGGTGAAAACTCAGGAGGTGATAAAGCCCAGGGCAAAAACTATCTCAAGACCTTCACCTTGGTTGAGTAACACTGACCCAACCACAAGCCCAATACCAGATATATCAAGCCCAATAGCTAATAATACTTTTGATCCTAATGATACCAAGACCTCAACTCTCAAGAGACTCGTCAGGAAGCCTTCCAAGCTCAACGACTATATTACTTAA 570 0.4456 MEGSVCVRKGAWSEVEDDLLRACVRQYGEGKWHLVPTRAGLNRCRKSCRQRWLNYLKPDIKRGEFAEDEVDIMLRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRRACSHKVVSNEKVKTQEVIKPRAKTISRPSPWLSNTDPTTSPIPDISSPIANNTFDPNDTKTSTLKRLVRKPSKLNDYIT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00242 189 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Cca09g00242 189 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Cca09g00242 189 SMART sant 61 109 IPR001005 -
Cca09g00242 189 SMART sant 8 58 IPR001005 -
Cca09g00242 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Cca09g00242 189 MobiDBLite consensus disorder prediction 137 171 - -
Cca09g00242 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Cca09g00242 189 CDD SANT 64 107 IPR001005 -
Cca09g00242 189 CDD SANT 11 56 IPR001005 -
Cca09g00242 189 Gene3D - 9 61 - -
Cca09g00242 189 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Cca09g00242 189 MobiDBLite consensus disorder prediction 136 173 - -
Cca09g00242 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 141 - -
Cca09g00242 189 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 141 - -
Cca09g00242 189 Gene3D - 63 135 - -
Cca09g00242 189 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Cca09g00242 189 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00242 Cca-Chr9 5907922 5913854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00242 7 136 MYB Transcription Factor Family AT1G66370 60.284 2.37e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00242 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00242 - K09422 gmx:100306270 245.743