Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00241 ATGGAAGGAATCGTATGTGTACGGAAAGGTGCATGGAGTGGAGTGGAAGATGACCTTCTTAGGGCATGTGTGAGACAATATGGAGAAGGAAAATGGCACTTGGTGCCTACAAGAGCGGGCTTGAACAGGTGCCGTAAGAGCTGCAGACTGAGGTGGTTGAATTATCTAAAACCAAATATCAAGAGGGGAGATTTCGCTGAAGACGAAGTTGATATGTTGCTAAGGTTGCATAAACTTTTGGGAAACAGATGGTCCCTGATTGCCGGAAGACTTCCCGGAAGAACACCAAATGATGTAAAAAACTACTGGAACACCTACATTCGCAGGAGAGCATGCTCTCATAAGGTGGTAAGCAATGAAAAGGAAGAGGAAATAGTGAAACCTCACGAGGTGATAAGGCCTCGGGCTCGAACTATCTCAAGAGCTTCACCCTGGTTGAGAGGGACAAGTGTTGTTAGAGAAGGTGCTGAAAGTGGGGTCAAACAGAGTTCAACTCAAGCATGTGGTGAGGCTTCATTATCAGAGTACAATAATTGGTGGAAAACTATGATGGATGATGATGATAAGGGGGGCAACATAGAGAACAGCCAAGATGGGTTTGGGAGGCTCATGGAAGACATTAATAATTGTCAAGAGAATCTTACTTCGTTGACCTCACAAGGTGGAGATTTTCCTATAGAAGGTCAAAATTGGAGTGATTTTCTTCTCGACACAAATTTGTGGGATTTCTGA 732 0.4413 MEGIVCVRKGAWSGVEDDLLRACVRQYGEGKWHLVPTRAGLNRCRKSCRLRWLNYLKPNIKRGDFAEDEVDMLLRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRRACSHKVVSNEKEEEIVKPHEVIRPRARTISRASPWLRGTSVVREGAESGVKQSSTQACGEASLSEYNNWWKTMMDDDDKGGNIENSQDGFGRLMEDINNCQENLTSLTSQGGDFPIEGQNWSDFLLDTNLWDF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00241 243 SMART sant 61 109 IPR001005 -
Cca09g00241 243 SMART sant 8 58 IPR001005 -
Cca09g00241 243 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Cca09g00241 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Cca09g00241 243 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Cca09g00241 243 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Cca09g00241 243 CDD SANT 67 107 IPR001005 -
Cca09g00241 243 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Cca09g00241 243 CDD SANT 11 56 IPR001005 -
Cca09g00241 243 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 154 - -
Cca09g00241 243 Gene3D - 9 61 - -
Cca09g00241 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Cca09g00241 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 154 - -
Cca09g00241 243 Gene3D - 64 132 - -
Cca09g00241 243 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00241 Cca-Chr9 5868385 5870874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00241 7 140 MYB Transcription Factor Family AT1G66370 60.993 2.16e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00241 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00241 - K16166 gmx:100306270 341.658