Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00238 ATGGAAGCAATGGAGAGCAATCAGAGAAATATAATGGAAGAGCAAAAGATGTTGGACTTGCCAGCAGGGTTCAGGTTTCATCCAACAGATGAAGAACTCATCACTTACTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCAAGAGCCATTGGAGAAGCTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTCGGATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACAAATAGGGCCACTGGTGCAGGCTATTGGAAGGCTACAGGCAAAGACAAAGAGATTCACAAGGCAAAGGCACTGATAGGAATGAAGAAAACTCTGGTTTTCTACAAGGGAAGAGCCCCACAGGGTGAAAAAACAAACTGGGTCATGCATGAATACAGATTGGAAAGTGAACATCCTGTGCACAATCTACCCAAAAAGGCCATGAATGACTGGGCCATCTGCAGGATTTTTCAGAAGGGTAACGGTGGGAAGAAAATGCAGATTCCTGGGTTGGTGAGGTTCAGCTCCTTTAGAAAGGACATGCCACCACTGATGGATTCTTCTCCATACAACAGTGAAGGAAAATCTGTCATGGGGGATTCATCACATTCACAGGCAACAACCTGCTTCTCTGGTCCAAATCAAAGTGAAGAACGAAGGACACAAGATGAAAACATAGTCGACAGCTTTGACAATACTATGTTTGCATCCAAATATTCCTCAAATAACCCCTCTGATATATTTTCCCCTGCCTCATGGAATTTTACCAAACCTGCCCCTACTGTGTCCCACCAATCACTCCAATTTGGGAATTCACAGTGCCCAGATTATTACATGCTTCAAGATCATTCCATGTTGGAGATGTTGATTGAAAACCATGGATCAAGTATTCAGAAAGCTCAGGACAAGGACTCTTTTGATGCTGACATGTCCTCTGTTATGTACAGCAATGAAATGCTTCAAAGATCATTTGGGAATCAGGAATATCCACCAGCTTCTGTAGGACATGTGTATACTAGTAGTGGCCTATGGGGATTTTAA 1074 0.4339 MEAMESNQRNIMEEQKMLDLPAGFRFHPTDEELITYYLSQKVLDSCFCARAIGEADLNKCEPWDLPRMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDKEIHKAKALIGMKKTLVFYKGRAPQGEKTNWVMHEYRLESEHPVHNLPKKAMNDWAICRIFQKGNGGKKMQIPGLVRFSSFRKDMPPLMDSSPYNSEGKSVMGDSSHSQATTCFSGPNQSEERRTQDENIVDSFDNTMFASKYSSNNPSDIFSPASWNFTKPAPTVSHQSLQFGNSQCPDYYMLQDHSMLEMLIENHGSSIQKAQDKDSFDADMSSVMYSNEMLQRSFGNQEYPPASVGHVYTSSGLWGF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00238 357 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Cca09g00238 357 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Cca09g00238 357 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
Cca09g00238 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 12 347 - -
Cca09g00238 357 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Cca09g00238 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 347 - -
Cca09g00238 357 MobiDBLite consensus disorder prediction 200 227 - -
Cca09g00238 357 MobiDBLite consensus disorder prediction 194 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00238 Cca-Chr9 5748958 5751207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00238 18 348 NAC Transcription Factor Family AT5G07680 51.039 1.54e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g00238 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00238 - - gmx:100781383 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00238 09 5748958 5751207 Cca09g00238 09 5748958 5751207 ECH
Cca07g02183 07 49995789 49997765 Cca09g00238 09 5748958 5751207 ECH