Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00234 ATGTTCACCTTCAAGAAAATGGCTCATCTTGCCTTTCTTCTTCTGGGGTGTCTCTCCATGATCTCATGTGCTAATGGCTATGTGAACAATGGGGGTTGGACCAATGCACATGCCACATTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTACAGCCAAGGTTATGGGACTAACACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGCTGTGGCTCATGCTACCAAATTAAATGTGCAAATGACCCACAATGGTGCCTCCCTGCCTCCATTGTTGTCACTGCAACCAATTTCTGCCCCCCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCACAATACAAAGCTGGAATTGTTCCTGTAGTTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATCAGGTTCACCATCAATGGTCATTCCTACTTCAATTTAGTCCTTGTGACTAATGTAGGGGGTGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGAACCAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCTTACTTGAATGGACAGAGTCTTTCCTTTTTGGTCACCACTAGTGATGGCCGCAGTGTGCTCTCATATAATGCTGCACCACCAAGTTGGTCCTTTGGACAGACCTACACTGGGAGCCAGTTCCGTTACTAA 750 0.4707 MFTFKKMAHLAFLLLGCLSMISCANGYVNNGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCANDPQWCLPASIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYTGSQFRY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00234 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 155 IPR007112 -
Cca09g00234 249 PANTHER EXPANSIN 10 248 - -
Cca09g00234 249 SUPERFAMILY Barwin-like endoglucanases 32 173 IPR036908 -
Cca09g00234 249 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Cca09g00234 249 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cca09g00234 249 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cca09g00234 249 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cca09g00234 249 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Cca09g00234 249 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Cca09g00234 249 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Cca09g00234 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Cca09g00234 249 PANTHER EXPANSIN-A15 10 248 IPR002963 GO:0009664
Cca09g00234 249 SMART dpbb_1 68 145 IPR007112 -
Cca09g00234 249 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Cca09g00234 249 Gene3D - 155 247 IPR036749 -
Cca09g00234 249 Pfam Lytic transglycolase 68 145 IPR009009 -
Cca09g00234 249 Gene3D - 20 151 IPR036908 -
Cca09g00234 249 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Cca09g00234 249 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Cca09g00234 249 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00234 Cca-Chr9 5605522 5607699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00234 6 248 Expansin Gene Family AT2G03090 76.494 8.77e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00234 - K20628 gmx:100799370 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00234 09 5605522 5607699 Cca03g00593 03 10292948 10295443 ECH
Cca09g00234 09 5605522 5607699 Cca11g01970 11 45092336 45096033 ECH
Cca09g00234 09 5605522 5607699 Cca09g00234 09 5605522 5607699 ECH
Cca07g02175 07 49913654 49915078 Cca09g00234 09 5605522 5607699 ECH
Cca06g00635 06 18003590 18005898 Cca09g00234 09 5605522 5607699 ECH