Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00229 ATGGCTGCAAGTTCATGTTCCTATGCATTCTcctatgacgtgttcctcagttttagaggttcagacacacgccatggttttgttggtaatctctacaaagctcttcatgacaagggaatccacactttcattgatgatgagaagcttcaaggaggagaggaaataacaccaacccttatgagggcaattgaggagtctaggattgccatcactgtgctctctcacaactatgcttcttcctcattttgcttggatgaacttgccagcatcattgattgtgtcgagaggaaaggattgttagttttgccggttttctataacttggatccttctgatgtgaggcaccagaaaggtagttatggagaagctttggctaaacatgaggaaaggttcaaagccaaggagaggttggagaaatggaagatggctttacatcaagtggctaacttgtctggctatcatttcaaacaaggAAATGGATATGAATATGAGTTTATCGGGAGGATTGTGGAGTTGGTTTCTAGCAAGATTAACCGTGCTCTTttacatgttgcggagtacccggttggactagagtcacaaatgcttgaagtaatgaaacttttagatgttggaactgatgatggtgtccacgtgatagggatccacggaattggtggaatagggaaaacaacacttgctgtagcaatttataatttggttgctaaccattttgatggtttgtgttttcttgaaaacgtgagagaaaattcagaaaaacatggattgcaacatcttcaaagcatcgttctttctgaattggttggagaaaagcaaatgaacatagcaagcgtaaaacatggagtttcaatgatacaacataggcttcaacaaaagaaagttctcttgattgtagatgatgttgacaagcatgaacaattacgggctgttgttggaaaacctgattggtttggtcctggcagcagaatcatcgtcacaactcgagacgaacaattgttagcatctcatgaggttaaaagaacttatgaggtcaaggaattgaacaagaacgatgctcttcaattgcttacatggaaagcttttaaaacagaaaaagttgatcccagttatgtggaggtcttgaaccatgtagtaacttatgctgctggccttccattggctttggaagtaataggttccaacttgtttggaaaaaatatacaagaatggaaatctgccatcaatcaatacgaaagagttcctaataaccaaatcttaaagatacttaaagtaagttttgatgctttggaggaagaagagaagagtgtttttcttgatattgcttgttgcttcaaaggatatgaactagaagaggtggaagatatacttcatattcatcatggtgactgcatgaaatatcatataaaggtgttggttgataaatctctcttaaagcttagtaggcatggtactatggtgacattgcatgacttgttagagaacatgggtaaagaaattgtacgacaggagtcaccaaaagatccggggaagcgcagtagattatggttccacgaggatataattcaagttttagaagacaacacaGGAACCAGTGAAATTGAAATCATACATCTGGACTGCCCCTTACTTGACAATGAAGAAATAATAGAATGGAATAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAGACATTGATTATTAAAAATGGTCATTTTTTCAATGGTCCCAAATATCTTCCAAATAGTTTAAGAGTATTGGAATGGTGGAGATATCCTTCACATGATTTACCATCTGATTTTCGTCCAAAGAAACTTGCCACATGCAAGTTACCCGAAAGTTGCTTTACATCACTTGAGTTGGTTGGCTTGTTGAAGAAGTTCATGAGTATGAGAATTTTGAATTTGGACAAGTCCAAGTGTTTAACACAGATACCTGATGTATCTGGTCTCCCTAATTTAGAAAAACTTTCATTTCAACATTGTCAGAGTTTAACTACAATTCACGGTTCAGTTGGGTTTCTATATAAACTTAAAACATTAAGTGCTTTTGGTTGCACTAAGCTTATGAGTTTTCCGCCAATCAAGTTAACCTCTCTTGAAAAACTCAATCTCTCACGTTGTTGCAGTCTTGAGAGTTTTCCAGAAATATTAGGGAAGATGGAAAACTTGAGGGGACTTCAGTTGGAGTACACTGCCATAAAAGAATTGCCATCTTCAATTCATAATCTTAGTCGGCTTCAAGAATTACAACTGGCTAACTGTGGAGTTGTTCAGTTACCAAGTAGCATTGTCATGATGCCAGAATTGACTGATATTATTGCTTGGAAATGGAAAGGGTGGCAATGGCTAAAACAAGAAGTGGGTGAAGAAAAAGTCGGATCAATAGTTTCTTCAAAGGTAGAATTGCTTTGGGCCTCAGATTGCAACCTGTATGATGATTTTTTTTCAATAGGTTTCACACAGTTTGCTCATGTGAAAGATTTAGACCTGTCTAAGAATAACTTCACAATCCTTCCTAAATGCATCAAAGAATTTCAGTTTTTAAGGAAGCTTAATGTTAATGATTGCCGGCATCTTCAGGAAATTAGAGGGATTCCTCCAAACTTAAAACATTTCTTAGCAACAAAATGTGAATCCTTGACTGCCTCAAGTACAAGCATGTTCCTAAATCAGGAACTGCATGAGGCTGGAGAAACTCAGTTTTATTTACCAGGAGAAAGGATTCCAGAGTGGTTTGATCACCAAAGCAAGGGACCTTCAATTTCTTTCTGGTTTCGTAACAAGTTCCCTGACAAAGTTCTTTGTCTTGTTATTGGACCTATGGATGATGAATCTGGAATGTTTAGGCCTATGGTGATCATCAATGGAAATAAAAGTTTCCCTGGTAGTGGCTATTTCATGATCCACATGGATCATACATATATTTTTGATCTTAAAAGGATAGAATGTGAAGATAGTTTATATGAAGTACCTTTAGAAAATGAATGGAACCATGCAGAGGTTACAATTGTTGGTTTGGAAGAGACCTCAATAGTTAAAGAATGCGGAATCCATGTATTCAAACAGGAAAGTAGCATGGAAGATATTCGATTTTCTGATCCTTATGGCAAGAGAAAATTAGAGGATGATCACAATAGTTTGGAAATACAAAACCTTCAGTTGGTGAAAAAGCATAGGTTTGTGGACATGGATGTTTCATAG 3201 0.1968 MAASSCSYAFSYDVFLSFRGSDTRHGFVGNLYKALHDKGIHTFIDDEKLQGGEEITPTLMRAIEESRIAITVLSHNYASSSFCLDELASIIDCVERKGLLVLPVFYNLDPSDVRHQKGSYGEALAKHEERFKAKERLEKWKMALHQVANLSGYHFKQGNGYEYEFIGRIVELVSSKINRALLHVAEYPVGLESQMLEVMKLLDVGTDDGVHVIGIHGIGGIGKTTLAVAIYNLVANHFDGLCFLENVRENSEKHGLQHLQSIVLSELVGEKQMNIASVKHGVSMIQHRLQQKKVLLIVDDVDKHEQLRAVVGKPDWFGPGSRIIVTTRDEQLLASHEVKRTYEVKELNKNDALQLLTWKAFKTEKVDPSYVEVLNHVVTYAAGLPLALEVIGSNLFGKNIQEWKSAINQYERVPNNQILKILKVSFDALEEEEKSVFLDIACCFKGYELEEVEDILHIHHGDCMKYHIKVLVDKSLLKLSRHGTMVTLHDLLENMGKEIVRQESPKDPGKRSRLWFHEDIIQVLEDNTGTSEIEIIHLDCPLLDNEEIIEWNRKAFKKMKNLKTLIIKNGHFFNGPKYLPNSLRVLEWWRYPSHDLPSDFRPKKLATCKLPESCFTSLELVGLLKKFMSMRILNLDKSKCLTQIPDVSGLPNLEKLSFQHCQSLTTIHGSVGFLYKLKTLSAFGCTKLMSFPPIKLTSLEKLNLSRCCSLESFPEILGKMENLRGLQLEYTAIKELPSSIHNLSRLQELQLANCGVVQLPSSIVMMPELTDIIAWKWKGWQWLKQEVGEEKVGSIVSSKVELLWASDCNLYDDFFSIGFTQFAHVKDLDLSKNNFTILPKCIKEFQFLRKLNVNDCRHLQEIRGIPPNLKHFLATKCESLTASSTSMFLNQELHEAGETQFYLPGERIPEWFDHQSKGPSISFWFRNKFPDKVLCLVIGPMDDESGMFRPMVIINGNKSFPGSGYFMIHMDHTYIFDLKRIECEDSLYEVPLENEWNHAEVTIVGLEETSIVKECGIHVFKQESSMEDIRFSDPYGKRKLEDDHNSLEIQNLQLVKKHRFVDMDVS 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00229 1066 Pfam C-JID domain 903 1020 IPR045344 -
Cca09g00229 1066 Pfam NB-ARC domain 193 416 IPR002182 GO:0043531
Cca09g00229 1066 SUPERFAMILY L domain-like 502 886 - -
Cca09g00229 1066 PRINTS Disease resistance protein signature 212 227 - -
Cca09g00229 1066 PRINTS Disease resistance protein signature 288 302 - -
Cca09g00229 1066 PRINTS Disease resistance protein signature 381 395 - -
Cca09g00229 1066 PRINTS Disease resistance protein signature 694 710 - -
Cca09g00229 1066 Gene3D - 346 430 IPR042197 -
Cca09g00229 1066 Gene3D Ribonuclease Inhibitor 712 895 IPR032675 -
Cca09g00229 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Cca09g00229 1066 SMART till_3 11 150 IPR000157 GO:0007165
Cca09g00229 1066 Gene3D - 177 341 IPR027417 -
Cca09g00229 1066 Gene3D - 10 176 IPR035897 -
Cca09g00229 1066 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 915 - -
Cca09g00229 1066 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Cca09g00229 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 915 IPR044974 GO:0006952
Cca09g00229 1066 Pfam TIR domain 12 177 IPR000157 GO:0007165
Cca09g00229 1066 Coils Coil 1037 1057 - -
Cca09g00229 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 153 IPR035897 -
Cca09g00229 1066 Gene3D Ribonuclease Inhibitor 525 711 IPR032675 -
Cca09g00229 1066 SUPERFAMILY "Winged helix" DNA-binding domain 417 525 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00229 Cca-Chr9 5425284 5429941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00229 7 769 WRKY Transcription Factor Family AT4G12020 31.858 4.31e-84 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00229 - - gmx:100780257 1858.96