Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00226 ATGGAGATAATAGcgccaccgccgccgccgccgAATTCGAAATCGCCGGAACCGGAACCCGAGACGCCGACCCGGATCCACCAAAGCGCGGCGCACGCGAACCCGAACCCAAAGCCGGTGTCTTTCTCAAACGGGGTTCTGAAGCGCCACCACCCTCCGCCGCAGCACCACCCCGTGGCGGTGGTGTACAAGGAATGCCTTAAGAACCACGTGGCCAGCCTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATgccgtcgccggccgccaccgccgacgaccccacctccatcaagtgcgccgcctgcggctgccaccgcaacttccaccgccgcGAGCCCGACGACCCCCCCATTTCGCCGGCCACGCACCACGTGCTCGAGTaccagccccaccaccgccaccaccctccgccaccGCATCGGAGCCCCAACTCCGCCTCCCCTCCGCCGATCTCGTCCTACCCCTCCGCGCCCCACATGCTCCTCGCCCTCTCCGGCGGACTCTCCGTGGCGCCGGAGAACACCGCCGCCCCCGCGCCGCCGCACCACTCGCGTAAGCGCTTCCGCACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGATAAAGTTGGGTGGAAGATGCAGAAGCACGATGATGAAATGGTTATGGAGTTTTGCAATGAAGTTGGCGTTGATAGAGGAGTTCTCAAGGTTTGGATGCacaacaacaagaacactctcggtaaaaaagacaacaacaacaacGTTAACGGTAGCGCTCTCGTTATTACCAACGGTCTTCCCGTTGATAATGTCAGTGTTACTGTTAGACCtgttcatgttcatgaccaccatcgtgatcatgaacaCCCTGAAATTAACGGTAACGGAAACGACAACCTCGGTTCCCAGGATGGAAATCAGTACGAGAATGATAGTGGAACTAACGGCGGAGGAACTAATGGGTCTTCTTCTTCTTCTTAA 981 0.4577 MEIIAPPPPPPNSKSPEPEPETPTRIHQSAAHANPNPKPVSFSNGVLKRHHPPPQHHPVAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPTSIKCAACGCHRNFHRREPDDPPISPATHHVLEYQPHHRHHPPPPHRSPNSASPPPISSYPSAPHMLLALSGGLSVAPENTAAPAPPHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKHDDEMVMEFCNEVGVDRGVLKVWMHNNKNTLGKKDNNNNVNGSALVITNGLPVDNVSVTVRPVHVHDHHRDHEHPEINGNGNDNLGSQDGNQYENDSGTNGGGTNGSSSSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00226 326 Gene3D - 174 248 - -
Cca09g00226 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 268 - -
Cca09g00226 326 MobiDBLite consensus disorder prediction 142 157 - -
Cca09g00226 326 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cca09g00226 326 MobiDBLite consensus disorder prediction 1 18 - -
Cca09g00226 326 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 187 244 IPR006455 -
Cca09g00226 326 MobiDBLite consensus disorder prediction 1 56 - -
Cca09g00226 326 SUPERFAMILY Homeodomain-like 177 248 IPR009057 -
Cca09g00226 326 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cca09g00226 326 MobiDBLite consensus disorder prediction 295 326 - -
Cca09g00226 326 MobiDBLite consensus disorder prediction 27 41 - -
Cca09g00226 326 MobiDBLite consensus disorder prediction 131 160 - -
Cca09g00226 326 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cca09g00226 326 MobiDBLite consensus disorder prediction 282 326 - -
Cca09g00226 326 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00226 Cca-Chr9 5235954 5237737 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00226 1 243 ZF-HD Transcription Factor Family AT5G15210 51.394 3.02e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca09g00226 ZF-HD_dimer 9.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00226 - - ccaj:109793219 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00226 09 5235954 5237737 Cca07g02152 07 49598917 49600179 PCT