Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00224 ATGAGGAAGCGCCAAGTGGTTGTGAGAAGAGAGGAGCCTCAAAGAAACGTTAGGAGTGTGAAATATGGTGAGTGCCAGAAGAATCATGCTGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGGGAGTTCATGGCCAGTGGTGGAGAAGGAACAAGTGTTGCTCTCGTTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAAAGACAGGTTGAAACTGAAGTAGTGTGTGAATGTTCCTCACCTCCCTCCAATGGCACTTGA 267 0.4869 MRKRQVVVRREEPQRNVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTSVALVCAACGCHRNFHKRQVETEVVCECSSPPSNGT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00224 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Cca09g00224 88 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Cca09g00224 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 83 - -
Cca09g00224 88 PANTHER BNAA09G44460D PROTEIN 18 83 - -
Cca09g00224 88 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00224 Cca-Chr9 5143800 5144066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00224 1 87 Zinc finger-homeobox gene family AT3G28917 67.677 3.77e-41 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca09g00224 ZF-HD_dimer 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00224 - - aprc:113868039 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00224 09 5143800 5144066 Cca09g00224 09 5143800 5144066 ECH