Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00223 ATGAGGAAGCGCCAAGTGGTTGTGAGAAGAGAGGAGCCTCAAAGAAACGTTAGGAGTGTGAAATATGGTGAGTGCCAGAAGAATCATGCTGCAAATGTTGGAGGGTATGCTGTTGACGGTTGTAGGGAGTTCATCGCCAGTGGTGGAGAAGGAACAAGTGCTGCTTTCACTTGTGCTACTTGTGGCTGCCACAGGAACTTCCACAAAAGACAGGTTGAAACTGAAGTAGTGTAA 234 0.4744 MRKRQVVVRREEPQRNVRSVKYGECQKNHAANVGGYAVDGCREFIASGGEGTSAAFTCATCGCHRNFHKRQVETEVV 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00223 77 PANTHER BNAA09G44460D PROTEIN 18 77 - -
Cca09g00223 77 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 77 - -
Cca09g00223 77 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Cca09g00223 77 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Cca09g00223 77 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00223 Cca-Chr9 5091509 5093961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00223 1 77 Zinc finger-homeobox gene family AT3G28917 66.292 8.37e-34 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca09g00223 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00223 - - aprc:113868039 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00223 09 5091509 5093961 Cca09g00223 09 5091509 5093961 ECH