Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00222 ATGGGAAGGCCACCATGTTGTGATAAAGAGGGTGTGAAGAAAGGACCATGGACTCCTGAAGAAGACATCATTTTGGTGACTTATATACAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCCTCCAATACTGGGTTGTCAAGGTGCAGCAAGAGTTGTAGACTTAGATGGACTAATTACCTTAGGCCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCCCTTTTAGGGAACAGATGGGCTGCCATAGCTGCCTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAAAAGAAGCTGAACAAATTGGAAGCAGGTTCTGAAGGAAGCTTGGGACACACAGGGGTTTCAGTTTCTCAGCCAATGTCAAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGACATCCACACTGCCAAGAAAGCCCTCAGTGAAGCTCTCTCACCAAACAAGACCTTGTTAGCTGAATCAAATTCAGCAAACCTCTTTAATGATAATAAGGTTTCCTTCTATAATTCCACTAAACCAACAACACAATCTATAAGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGCTTAAGGGGTGGATGAAGAATGCTCCAAAAGCCTCAAGAGCTGTGACTCAAAATTCCTTCAACAACTTGGCTGACACTGCCTGCAGTGAAGGAACAACAAGTGGGGGACCAAAGGGAAGCACAAGCAGTGTTGAAATGTCTGAGACTAATTTTGAGTCCTTGTTTGGTTATGAGTCTTTGGATTTGGAATCTTCAAATTCTGAGTTCTCACAATCTCTTTCTCCCGAGGCTACTCTTTTCCAAGATGAGAGCAAGCCAGATACTGCTGGAATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGGATCTTGTCAAGAGAAACTTATCTTCTAG 969 0.4293 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWKAVPSNTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEAGSEGSLGHTGVSVSQPMSRGQWERRLQTDIHTAKKALSEALSPNKTLLAESNSANLFNDNKVSFYNSTKPTTQSISYASSADNIARLLKGWMKNAPKASRAVTQNSFNNLADTACSEGTTSGGPKGSTSSVEMSETNFESLFGYESLDLESSNSEFSQSLSPEATLFQDESKPDTAGIDMPFSLLEKWLLDDGSCQEKLIF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00222 322 CDD SANT 69 112 IPR001005 -
Cca09g00222 322 CDD SANT 16 61 IPR001005 -
Cca09g00222 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca09g00222 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca09g00222 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Cca09g00222 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca09g00222 322 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 320 - -
Cca09g00222 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca09g00222 322 SMART sant 13 63 IPR001005 -
Cca09g00222 322 SMART sant 66 114 IPR001005 -
Cca09g00222 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca09g00222 322 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca09g00222 322 Gene3D - 69 127 - -
Cca09g00222 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca09g00222 322 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00222 Cca-Chr9 5004458 5006402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00222 1 315 MYB Transcription Factor Family AT5G62470 50.142 5.65e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00222 Myb_DNA-binding 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00222 K09422 - gmx:780542 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00222 09 5004458 5006402 Cca07g02149 07 49509860 49512151 PCT