Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00221 ATGACACGTACACAAGCTGTTTATTGGCGTACGGTGTGGCTGGTAACTACTTGGATAGTGTGGAGGACAAGGAATCTATGTAGGTTCAAGGATAGCAGCTTCTGTTTTGATAGTATGGTGAAAGAGATTCAGTTAGAGAGGGAGGGTGGGTGGGGTAGAGTTGCTCATAATAAGGCTGGAGTAGCGAGTTGTGAAGGGTTCACTGTAACAACTACTGAAGTGGCAAATTTGCACACACTGTTGAAGCTTCTTAGAGATATTGGAACAAGTGTTGACATCTTGAGAAGCCTCTCTCTATATATTTGCATTTGGTTCTTGGACAAGAAATTCAGAGAGAGAGAGAACATGGAGGAGAGGAATGAGATGGAAAAGATTGAGGATGTGATGCCAGGCTTTCGTTTTCACCCAACTGATGAAGAGCTTGTTGATTTTTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAACTGATCAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAGTAAGAACTCTTCTGATTCATACTCATTTTTTTTTCTACCTTTCTCTTCTTTTGCTGTTTTGCTTTATGCCACATAG 600 0.405 MTRTQAVYWRTVWLVTTWIVWRTRNLCRFKDSSFCFDSMVKEIQLEREGGWGRVAHNKAGVASCEGFTVTTTEVANLHTLLKLLRDIGTSVDILRSLSLYICIWFLDKKFRERENMEERNEMEKIEDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPSKNSSDSYSFFFLPFSSFAVLLYAT 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00221 199 Pfam No apical meristem (NAM) protein 130 187 IPR003441 GO:0003677|GO:0006355
Cca09g00221 199 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 116 180 - -
Cca09g00221 199 Gene3D NAC domain 137 191 IPR036093 GO:0003677|GO:0006355
Cca09g00221 199 Coils Coil 106 128 - -
Cca09g00221 199 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 116 180 - -
Cca09g00221 199 SUPERFAMILY NAC domain 123 188 IPR036093 GO:0003677|GO:0006355
Cca09g00221 199 ProSiteProfiles NAC domain profile. 128 199 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00221 Cca-Chr9 4946771 4950823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00221 117 174 NAC Transcription Factor Family AT5G39820 74.576 1.46e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g00221 NAM 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00221 - - gmx:100778120 124.79