Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00219 ATGGAGGAGAGGAATGAGATGGAAAAGATTGAGGATGTGATGCCAGGCTTTCGTTTTCACCCAACTGATGAAGAGCTTGTTGATTTTTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAACTGATCAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCAGGTACTGGGGAAAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAGTACAGGAACAGTGCACGTCCAAATAGAGTGACAAGAGCAGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATATTCCTCTGAAGGAAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTTTACAGAGGCAGAGCTGCCAAAGGAATGAAAACTGACTGGATGATGCATGAGTTTAGGCTTCCTTGCATCTCAGACTCAGCCCCTCCCAAAAACCTTTCTGACAAAAGCCTCCCTCCAAGTGACTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTCTCCATGGCACAGAAAGCCTTATCTCACCCTTGGATCTCTCAGTTACCTGGAAGCATGGTACCTGACATGTTCTCACATGGTGCAAACTTTCCCCAGCTAGGATCACCAGCCATTCAATTTTGTGGTGACAAGCAAGAGTTACACCAAGTCTCCAATGGCACCAACACCAACTTCTCAGCCTCAGACATTAGTCCCACTTACAAACCCATCAACAGCACAGTTTCCAAGCCATCACAAGTTCCTGTTCCAGATGGAGACCTTTCTGACAACTTCATATTCTGCACAGGACCCACCAAGTCCACACTTGATAATGCTACTTCTTCCATGCTTTCTCCCAACAACCCTGACTACATAGCATTTGAAGAGCCAAACCAACACTATAGTGGCTTCTCAATCAGTCTACTACCCCAAGATATGCAACAAAACTTGAGCACAGAAACTAAAGAACAAGAGTGGGAAACTGTTGTAAGAAACACTGGATTTCCCTTCAGTTTGCCTCCATATGATGCTTGGAAGGCTTCTTCTGTGCCATGGGATTCACCTCCTTGCCCCAGTGACATGTCCACTACCTTTTCCACTAATAAATGCTACACATAG 1119 0.4477 MEERNEMEKIEDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPPKNLSDKSLPPSDSWAICRIFKKTNSLSMAQKALSHPWISQLPGSMVPDMFSHGANFPQLGSPAIQFCGDKQELHQVSNGTNTNFSASDISPTYKPINSTVSKPSQVPVPDGDLSDNFIFCTGPTKSTLDNATSSMLSPNNPDYIAFEEPNQHYSGFSISLLPQDMQQNLSTETKEQEWETVVRNTGFPFSLPPYDAWKASSVPWDSPPCPSDMSTTFSTNKCYT 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00219 372 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Cca09g00219 372 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Cca09g00219 372 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 370 - -
Cca09g00219 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 370 - -
Cca09g00219 372 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Cca09g00219 372 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00219 Cca-Chr9 4899662 4903144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00219 2 186 NAC Transcription Factor Family AT5G39820 68.500 1.21e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g00219 NAM 2.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00219 - - gmx:100778120 620.157