Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00214 ATGTCTAGCAGAAGGTCCAGGCAGCAATCTTCGTCAACAAGGATCTCTGATGACCAAATCATCGACCTTGTTTCCAAGTTGCGCCAACTTGTTCCTGAGATTCGTGATAGGCGTTCTGATAAGGTATCAGCATCCAAGGTCCTACAAGAGACCTGTAACTACATCAGAAGCTTACACAGAGAAGTGGATGATTTGAGCGAACGACTGTCTCAGTTGTTGGCCACAATTGATGCTGATAGTCCTGAAGCTGCTATCATTAGGAGCCTAATTAACTAA 276 0.4457 MSSRRSRQQSSSTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLIN 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00214 91 Coils Coil 55 75 - -
Cca09g00214 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Cca09g00214 91 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Cca09g00214 91 Gene3D - 2 83 IPR036638 GO:0046983
Cca09g00214 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Cca09g00214 91 CDD bHLH_AtPRE_like 14 75 - -
Cca09g00214 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Cca09g00214 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00214 Cca-Chr9 4633977 4636752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00214 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 7.99e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g00214 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00214 - - gmx:100794486 152.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00214 09 4633977 4636752 Cca03g00555 03 9481936 9484357 ECH
Cca09g00214 09 4633977 4636752 Cca09g00214 09 4633977 4636752 ECH
Cca07g02144 07 49418343 49420402 Cca09g00214 09 4633977 4636752 ECH
Cca06g00690 06 18983594 18984922 Cca09g00214 09 4633977 4636752 ECH
Cca09g00214 09 4633977 4636752 Cca07g02144 07 49418343 49420402 PCT