Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00211 ATGGCCTTCCCTCCCTCTCACACTTTCATGTTCCAAACCCACGAAGATCATGACCACCAACTCCATCTCCGATCAACCTCAACCACCTCTCTCAACGCCTTCCCCTCCTTCCCTCCCCATCACTTTCAAGGTGCAGGTGCAGGTTTTATGATGAAGAGGTCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGACGATGGATCTCAGCTTGGTGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTAGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTTGCCAAGGCCTTGGGGCTTCAGCCAAGGCAGATTGCCATATGGTTCCAGAACAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTGCTCAAGAAGCAGTTTGAAGCTGTCAAGGCTGATAATGACTCCCTCAAGGCTCAGAACCAGAAACTACATGCAGAGGTAATTCAATGCTACCATGGCTTTTGTAGTTACCGTACTGGTTGA 558 0.4928 MAFPPSHTFMFQTHEDHDHQLHLRSTSTTSLNAFPSFPPHHFQGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAEVIQCYHGFCSYRTG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00211 185 Gene3D - 75 146 - -
Cca09g00211 185 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Cca09g00211 185 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 174 - -
Cca09g00211 185 SUPERFAMILY Homeodomain-like 73 140 IPR009057 -
Cca09g00211 185 Coils Coil 130 171 - -
Cca09g00211 185 Pfam Homeobox associated leucine zipper 138 173 IPR003106 GO:0006355|GO:0043565
Cca09g00211 185 SMART HOX_1 81 142 IPR001356 GO:0003677
Cca09g00211 185 CDD homeodomain 83 139 IPR001356 GO:0003677
Cca09g00211 185 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Cca09g00211 185 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 174 IPR045224 GO:0003700
Cca09g00211 185 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Cca09g00211 185 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Cca09g00211 185 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00211 Cca-Chr9 4484941 4488411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00211 1 173 Homeobox Transcription Factor Family AT5G15150 64.062 7.57e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca09g00211 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00211 K09338 - gmx:100816097 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00211 09 4484941 4488411 Cca09g00211 09 4484941 4488411 ECH
Cca09g00211 09 4484941 4488411 Cca07g02140 07 49303510 49306303 PCT