Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00208 ATGGGGAGCCTTGCTGGTACTCAGGTCGGTACTACGAGTGCGAGCAAATCCAATGGAAGGAGAAACAAAGATGTTGTTCAAGGTTCTACAACTGAAAAAGGTTCAAGATTTTGGAGGAAACTCAGGATTTTGCTATGTTGCTTGCGTTTGAATTCCGAGAAGGAAAGCTCCTCTAATGAAAAAACCAAACAACGCTATGGAAAAAATGTTACAACTGATGTTGTTAGACACCAACCAGTTAATTCAAGATCCTCATCCACCAAAAAATTTAGAAGCCGTGCAAGATCTTGCACTCCCAACATGAGCCCGGAACTTATAGTAGCTTCTTCCCTTCTTCGAAGGTTCAGCTTTAATGATCTTAAATTGGCAACAAGAAATTTCAAAGCTGAGAATTTTCTTGGTGAGGGAGGGTTTGGAACTGTGTTGAAAGGTTGGATCAGCCAGCATGGGAACTATGCAGCAAGGCCTGGAGTAGGGATTCCAGTTGCAGTGAAGAGTCTCAACCTGAAGGGATTTCAGGGTCATAAGGAATGGCTTGCTGAAATTAGTTATCTGGGTGAACTCCATCATCCAAATCTGGTTAAATTGGTTGGCTTTTGCATCGAAGATGACAATAGGTTACTGGTATATGAGTACATGTGTCGAGGAAGCTTAGACAAGCATCTGTTCAGGTCCTTCAGGAGGTCTACGCGCCAGCTTTCATGGTCTCTGAGACTGAAAATTATGATTGGTGCTGCGAAGGGCCTTGCTTTTTTGCATGAGGAAGCTTCAAAGCCAGTGATATTTCGAGACTTCAAAACATCTAATATCTTATTGGATATGAACTTCAATGCAAAACTTTCTGATTTTGGGCTTGCTAGAGATGGTCCAGTGGGAGATGCAACTCATGTGTCAACTCAAATAATAGGAACACAAGGCTATGCTGCCCCTGAATATGTGATGACAGGACACCTCACTTCCAAGAGTGATGTCTACAGCTTTGGGGTGGTCCTACTTGAAATACTGACAGGTAGAAGAGCCATGGACAAATCATTGCCTAGGAGAGAGCAAAACTTGGTGGAATGGATGCGCCCTCTTCTCAAGAACAAAGAAAACTTCCACTATCTGATGGACCCTAGACTTGGAGGTCAATACTCAAGGAGAGGTGCAAATAGGGCAATGAGGTTGGCTAGTCACTGTGTTCGCCCTGACCCAAAAGCAAGACCCCTTATGAGTGAAGTAGTTCGTGTGTTGAAGTCTTTGCCTGGTCAGAATGAGAAAAACATGGAGGACCCCTCAACAAGGTCCGCATCAACTTCAACTCGCTCAGTTTCAATTCAATCAAGTTCACTTCACATAATACATGAAGGACCCTCCAACCATAATGGTGGTGCTAACAAGTATGGTCTCAGAACTGATCCAGAACCAAACGTTCCATGGCGCTTTCAAGCCTCTCCACTGAGCCTAGAGTATCCTCTACCTCCTCCAAACACTGCTGTTGGACTTTCATTGACCAACTGA 1500 0.44 MGSLAGTQVGTTSASKSNGRRNKDVVQGSTTEKGSRFWRKLRILLCCLRLNSEKESSSNEKTKQRYGKNVTTDVVRHQPVNSRSSSTKKFRSRARSCTPNMSPELIVASSLLRRFSFNDLKLATRNFKAENFLGEGGFGTVLKGWISQHGNYAARPGVGIPVAVKSLNLKGFQGHKEWLAEISYLGELHHPNLVKLVGFCIEDDNRLLVYEYMCRGSLDKHLFRSFRRSTRQLSWSLRLKIMIGAAKGLAFLHEEASKPVIFRDFKTSNILLDMNFNAKLSDFGLARDGPVGDATHVSTQIIGTQGYAAPEYVMTGHLTSKSDVYSFGVVLLEILTGRRAMDKSLPRREQNLVEWMRPLLKNKENFHYLMDPRLGGQYSRRGANRAMRLASHCVRPDPKARPLMSEVVRVLKSLPGQNEKNMEDPSTRSASTSTRSVSIQSSSLHIIHEGPSNHNGGANKYGLRTDPEPNVPWRFQASPLSLEYPLPPPNTAVGLSLTN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00208 499 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Cca09g00208 499 MobiDBLite consensus disorder prediction 480 499 - -
Cca09g00208 499 Gene3D Phosphorylase Kinase; domain 1 104 212 - -
Cca09g00208 499 MobiDBLite consensus disorder prediction 419 449 - -
Cca09g00208 499 Pfam Protein tyrosine and serine/threonine kinase 129 410 IPR001245 GO:0004672|GO:0006468
Cca09g00208 499 CDD STKc_IRAK 133 414 - -
Cca09g00208 499 ProSiteProfiles Protein kinase domain profile. 127 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00208 499 Gene3D Transferase(Phosphotransferase) domain 1 213 438 - -
Cca09g00208 499 PANTHER OS01G0588500 PROTEIN-RELATED 69 442 - -
Cca09g00208 499 MobiDBLite consensus disorder prediction 1 31 - -
Cca09g00208 499 MobiDBLite consensus disorder prediction 413 474 - -
Cca09g00208 499 PANTHER TYROSINE KINASE FAMILY PROTEIN 69 442 - -
Cca09g00208 499 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00208 Cca-Chr9 4356776 4388125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00208 115 442 Glycoside Hydrolase AT3G07070 47.866 1.95e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca09g00208 PK_Tyr_Ser-Thr 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00208 - - ccaj:109817012 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00208 09 4356776 4388125 Cca11g01940 11 44774576 44778729 ECH
Cca09g00208 09 4356776 4388125 Cca09g00208 09 4356776 4388125 ECH
Cca06g00697 06 19085841 19090074 Cca09g00208 09 4356776 4388125 ECH