Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00205 ATGGGTAAGATGAAAGAAGAGAATGAAAGATTGAAGATGATGCTAGAAAAAGTTGAAAAGGAATACCACTCTCTTCAACTTCGTTTTTTTGACATCCTTCAAAGAGAAGCTTCCAAGAAAGGTGGGGAAGATTCAGCTGCTCCCCTTGATGAAGAGGAGGAACCTAAACTTGTGTCACTTTGTCTTGGAAGAAGTCCAAGAGAGCCTAAAAAGGATGAAATAACTGATAAGTATAGCAAACAAAAAGAAAATGAAGATTTGCAAGCCAACCTTACCCTTAGTTTAGACTTCAAAAGTGCGTCTTCAAAGGAACAGTTATCTGATATGATCCCCATGAACACTTCAGAAGGACTAAAGGAAGAAGATTCAACAAATAAATTAATAAGGACCAAAGATGGAGGTGATGAAATTTCAGAACTAACACCCCCCACCAAGAAGGCTAGAGTTTGTGTGAAAGCTCGATGTGATACTCCCACGATGCATGATGGATGCCAGTGGAGGAAATATGGACGAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACACTTGCTCCAGCATGCCCGGTTAGGAAACATGTGCAAAGATGTGCTGAGGACATGTCCATCTTAACCACCACATATGAAGGAACTCACAACCACTCACTTCCAGCTTCAGCCACAGCTATGGCTTCCACCACTTCTGCTGCTGTTTCCATGTTGTTGTCAGGTTGTTCAATATCCCAACATACAGATCACAATTTTGCATCTCATGCAAATTCTCCTACACTGTTCAGTGGTTTAAATTTGGGCCTTTTAGACCAACGTCCAAGAGCAAACCAAGCCTTGTTACGAACCCCTTCCTCACATTTTCTCCCAACAATCACTCTAGACATGACTTCTGCTCCATCCTCATCAACTCATGTCCATTGCCTACCTTCAAGCTTTGCTTCAACCCCAAGAATCCCATCATTAAGTCCAAACTTTTGCTCCTCAGAATCCAACATTCCACTATCGTTTTGGCGCAAGGGACTTTCTAAAAGTGGCACTACTGTTCCTATTGGCAAAACTTACATCAATCCATTCAATATGGGAAATCAATTTCAAGAACATTTCTACCAACAATGCTTTAAGAACCAAGAGCCTTTGGCAGAAATACTAACCAAAGCAATAAGCACAGACACAAGTCTTTGTTCTGTTATAGCCGCTGCAATTTCATCTATAAGTGGACAAGGATCAAGTAGTGAGAACATGGGTGATGGAAAATTTTTTGGTTCAGGATTGAGCCTGAAACTAGGGGTGCATTCTCAACTTGCTTCATCCAATTCCTTGAACCAGAATGGGAAATGA 1341 0.4116 MGKMKEENERLKMMLEKVEKEYHSLQLRFFDILQREASKKGGEDSAAPLDEEEEPKLVSLCLGRSPREPKKDEITDKYSKQKENEDLQANLTLSLDFKSASSKEQLSDMIPMNTSEGLKEEDSTNKLIRTKDGGDEISELTPPTKKARVCVKARCDTPTMHDGCQWRKYGRKIAKGNPCPRAYYRCTLAPACPVRKHVQRCAEDMSILTTTYEGTHNHSLPASATAMASTTSAAVSMLLSGCSISQHTDHNFASHANSPTLFSGLNLGLLDQRPRANQALLRTPSSHFLPTITLDMTSAPSSSTHVHCLPSSFASTPRIPSLSPNFCSSESNIPLSFWRKGLSKSGTTVPIGKTYINPFNMGNQFQEHFYQQCFKNQEPLAEILTKAISTDTSLCSVIAAAISSISGQGSSSENMGDGKFFGSGLSLKLGVHSQLASSNSLNQNGK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00205 446 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00205 446 MobiDBLite consensus disorder prediction 38 85 - -
Cca09g00205 446 Gene3D WRKY domain 145 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g00205 446 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 1 444 - -
Cca09g00205 446 SUPERFAMILY WRKY DNA-binding domain 154 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g00205 446 MobiDBLite consensus disorder prediction 65 84 - -
Cca09g00205 446 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00205 446 Coils Coil 1 28 - -
Cca09g00205 446 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 444 IPR044810 GO:0003700
Cca09g00205 446 MobiDBLite consensus disorder prediction 38 58 - -
Cca09g00205 446 Pfam WRKY DNA -binding domain 162 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00205 Cca-Chr9 4300531 4303643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00205 1 416 WRKY Transcription Factor Family AT5G15130 41.087 1.41e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g00205 WRKY 1.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00205 - - ccaj:109788554 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00205 09 4300531 4303643 Cca03g00548 03 9296910 9301564 ECH
Cca09g00205 09 4300531 4303643 Cca11g01930 11 44650725 44655503 ECH
Cca09g00205 09 4300531 4303643 Cca09g00205 09 4300531 4303643 ECH
Cca07g02129 07 49141645 49144930 Cca09g00205 09 4300531 4303643 ECH
Cca06g00704 06 19209173 19216232 Cca09g00205 09 4300531 4303643 ECH