Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00202 ATGTATGTTATTATTGGTTCATCAGTTGGGGCTTCTGTTCTACTCTTGGCTACTGTCATATCTTGCTTTTTTATGCGTAAAGGCAAGAGGAGATATCATGAACAAGACCACATTGATTCTCTCCCTACTCAAAGGCTGGCTTCTTGGAAGAGTGACGATCCTGCAGAAGCTGCTCATTGCTTCAGTTTTTCTGAAATTGAAAATGCTACAAATAAATTTGAGAAAAAAATTGGTTCTGGTGGTTTTGGAGTTGTATACTATGGAAAACTCAAAGATGGAAAAGAGATAGCAGTTAAAGTTTTAACCAGTAATTCCTATCAAGGAAAGCGAGAGTTCTCCAATGAGGTGACTCTTCTTTCAAGAATACATCACAGAAATTTGGTACAGCTTCTTGGGTATTGCCGAGATGAAGAGAATAGTATGCTTGTTTATGAGTTCATGCATAATGGCACTCTCAAGGAACATCTTTATGGCCCGTTAGCGCATGGACGGAGTATCAATTGGATTAAGCGCCTAGAGATTGCAGAAGATGCTGCCAAAGGGATTGAATATCTTCATACGGGTTGTGTTCCTGTCGTTATCCATAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAGAGCCAAGGTTTCAGATTTCGGTCTTTCAAAACTGGCAGTTGATGGGGTTTCCCATGTTTCAAGCATAGTTCGGGGGACAGTAGGATATCTGGATCCTGAGTACTATATTTCTCAGCAGCTGACTGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCGAATGAAAGCTTTGGGTTAAATTGCCGAAACATAGTCCAATGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGAATTATCGATCCCTTGCTGCGGAATGACTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCCCATGGGCATATGCGGCCATCAATTTCAGAAGTTCTAAAGGAGATCCAAGATGCAATATCTATAGAGAGACAGGCAGAATCATTAAGAGAAGGCAATTCAGATGATATGTCAAAAAATTCTTTTCATTCTTCCGCGAACTTGGGTTCAATGGATCTAGGTGGAGCTGAGAGTTACCTGTCTATTGATGAATCAATTACGCAGCCAACAGCAAGATAG 1200 0.4 MYVIIGSSVGASVLLLATVISCFFMRKGKRRYHEQDHIDSLPTQRLASWKSDDPAEAAHCFSFSEIENATNKFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCRDEENSMLVYEFMHNGTLKEHLYGPLAHGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGLNCRNIVQWAKLHIESGDIQGIIDPLLRNDYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAISIERQAESLREGNSDDMSKNSFHSSANLGSMDLGGAESYLSIDESITQPTAR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00202 399 Gene3D Phosphorylase Kinase; domain 1 47 146 - -
Cca09g00202 399 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00202 399 Pfam Protein tyrosine and serine/threonine kinase 72 273 IPR001245 GO:0004672|GO:0006468
Cca09g00202 399 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Cca09g00202 399 CDD STKc_IRAK 77 344 - -
Cca09g00202 399 SUPERFAMILY Protein kinase-like (PK-like) 56 341 IPR011009 -
Cca09g00202 399 PANTHER OS07G0107800 PROTEIN-RELATED 1 399 - -
Cca09g00202 399 Gene3D Transferase(Phosphotransferase) domain 1 147 370 - -
Cca09g00202 399 PANTHER TYROSINE KINASE DOMAIN PROTEIN 1 399 - -
Cca09g00202 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Cca09g00202 399 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00202 Cca-Chr9 4148967 4152861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00202 58 373 Receptor kinase-like Gene Family AT1G67720 52.663 5.62e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca09g00202 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00202 - - ccaj:109813065 797.349