Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00198 ATGGGAAGAATAATGGTTGGAAGTGCAAATAAGGTTGCTCTAATCCTCTTGGCCACTTTCGCCATTATTCCATGCCTTGAGGCTGGCATTGGTGAGTTCGATGATTTTCTGAAAGCCCAAGCTGCAGAAGCAGAAAAACGCGCTCTAGAGTCCTACATCCCATCGCCTATAGATGTCACCGATGAACTCAATTTCCATGTTCACTTGGCATTGAATAACGCGACACTGAAGAGGAGGGAACTAAGGCAGAGGAAGACAGGAGATGAGGCATGTGAGGCGACAAACCCAATAGACACATGCTGGAGGTGTGACCCTAACTGGGCGAACGACCGTTACAAGTTGGCGAAATGCGGCAAAGGGTTCGGAAGACGGGCCGTGGGCGGGCTGGGCGGGCCCATCTACGTGGTGACCGACGAGTCCGACGACGACATGGAGAACCCTAAGCCCGGAACCCTCCGGTACGGCGTGACCCAACAGGGCCCACTGTGGATCACGTTCCAGCGCAGCATGATCATCACTCTCAAACAGGAGCTGATGATTTCCTCCGACAAGACCATCGACGGCCGCGGCGCCAACGTTCAGATAAAGGACGGCGCTGGCATAACGATGCAGTTCGTGAACAACGTCATCGTCCACGGAATCCGCATCAAGAACGTTGTCCCGAAGGACGGTGGCATGATCAGAGACTCGTACAACCACGTCGGGTTCAGGACGAGGAGCGACGGCGACGCCATCTCCATCTTCGGAGCCTCCAACATTTGGATCGACCATGTTTCCCTCTCTAACTGCGCCGATGGCCTCATCGACGTGATCCAGGCTTCGACCGCCATCACCATCTCAAACTGCCACATGACGAAACACAACGATGTCATGCTGTTCGGTGCGAATGACATGTACGACAAGGACAAGATCATGCAGATAACAGTGGCGTTCAACCACTTCGGGCAGGGTTTGATTCAGAGGATGCCGAGGTGCAGGTGGGGGTTCGTGCACGTCCTCAACAACGACTACACTCACTGGATGATGTACGCCATCGGAGGAAGCTCAGGGCCAACCATTCTGAGCCAAGGAAACCGTTTCATCGCTCCCAACAACGACGCCGCGAAGGTGATCACGCACCGAGACTACGCCCAACCCGATGTGTGGAAGAATTGGCAGTGGCAATCTGAAATGGACCTCTTCATGAACGGGGCCACCTTCATCTCTTCAGGGTCACCGATCAAGTTGACGTACAACAAGGGTCTCATCATGAAGCCCAGAGATGGCACTCACGTTAGCAGGCTCACACGCCATGCTGGTGCCCTAGATTGCTTCGTTGGCAGGCCTTGTTAG 1332 0.5435 MGRIMVGSANKVALILLATFAIIPCLEAGIGEFDDFLKAQAAEAEKRALESYIPSPIDVTDELNFHVHLALNNATLKRRELRQRKTGDEACEATNPIDTCWRCDPNWANDRYKLAKCGKGFGRRAVGGLGGPIYVVTDESDDDMENPKPGTLRYGVTQQGPLWITFQRSMIITLKQELMISSDKTIDGRGANVQIKDGAGITMQFVNNVIVHGIRIKNVVPKDGGMIRDSYNHVGFRTRSDGDAISIFGASNIWIDHVSLSNCADGLIDVIQASTAITISNCHMTKHNDVMLFGANDMYDKDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKVITHRDYAQPDVWKNWQWQSEMDLFMNGATFISSGSPIKLTYNKGLIMKPRDGTHVSRLTRHAGALDCFVGRPC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00198 443 PANTHER PECTATE LYASE 18-RELATED 9 443 IPR045032 GO:0030570
Cca09g00198 443 SMART amb_all 169 366 IPR002022 -
Cca09g00198 443 PANTHER PECTATE LYASE 9 443 - -
Cca09g00198 443 SUPERFAMILY Pectin lyase-like 95 434 IPR011050 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Cca09g00198 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Cca09g00198 443 Pfam Pectate lyase 175 360 IPR002022 -
Cca09g00198 443 Pfam Pectate lyase, N terminus 30 81 IPR007524 GO:0030570
Cca09g00198 443 Gene3D - 94 436 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00198 Cca-Chr9 4097597 4100129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00198 14 443 Polysaccharide Lyase AT1G14420 56.152 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00198 K01728 - gmx:100785801 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00198 09 4097597 4100129 Cca03g00547 03 9261970 9264192 ECH
Cca09g00198 09 4097597 4100129 Cca09g00198 09 4097597 4100129 ECH
Cca07g02120 07 49054634 49056832 Cca09g00198 09 4097597 4100129 ECH