Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00197 ATGACGGACGGTCATCTCTTCAACAACATCACCCTCGGAGGCCGCGGAGGCACCAATCCAGGGCAGATAAAAATATATTCTGGAGGAATTATATGGAAGAGACAGGGTGGTGGCAAATTAATTGAAGTTGATAAATCCGACATAATGGGGGTCACATGGATGAAGGTTCCAAGGACTAACCAACTTGGTGTTCAAATCAAAGATGGGTTGTACTACAAGTTCACTGGATTTCGTGACCAGGATGTTGCAAGTTTGACCAATTTTTTCCAAAACACCTGTGGAATAACGGTAGAGGAGAAGCAGCTTTCTGTTAGTGGGCGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTTATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACGCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTTGGCGCAGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAGTGTGGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTACCAAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGAACTGGCAATAAATGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTTATTCATGAAGTGTTCACCACAATATTACGTGGCTTGTCCAGTGCTAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTAAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCAACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGATTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAACGAGTACCACAATTTGTATGAATTTATCAGTTCGAAGGGCTTGAAAATTTTGAACTTGGGAGATGCCCAACCCACTGTTGGTATAAAGAAGGTTCTCGAGAatgatgatgatgatgctgttgatCCACATCTTGAGCGCATAAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGATTCTGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCCACTGATGATTCTGGGGCAGACGATTCTGATGGCAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAATCAAAGAAGGACCTGCCTTCTAAGGCATCTACTTCTaaaaagaaaccaaaagatgatgaagatggaaagaagaaaaaacagaagaagaaaaagGACCCAAATGCACCGAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTGAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTGGAAGAGAAGGAACCATACGAGGAAAAAGCACGGGCAGATAAAAAACGTTACAAAGATGAGATTAGTGGGTACAAGAATCCCCAACCCATGAATATTGATTCAGGAAATGATTCTGACAGTGCCTAA 1923 0.3957 MTDGHLFNNITLGGRGGTNPGQIKIYSGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGITVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAINEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSSAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKILNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDEGSPTDDSGADDSDGSDSGDEKEKPAKKESKKDLPSKASTSKKKPKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSVEEKEPYEEKARADKKRYKDEISGYKNPQPMNIDSGNDSDSA 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00197 640 SMART Rtt106_2 348 441 IPR013719 -
Cca09g00197 640 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Cca09g00197 640 SUPERFAMILY PH domain-like 206 439 - -
Cca09g00197 640 CDD HMGB-UBF_HMG-box 556 621 - -
Cca09g00197 640 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Cca09g00197 640 SUPERFAMILY HMG-box 543 625 IPR036910 -
Cca09g00197 640 MobiDBLite consensus disorder prediction 594 621 - -
Cca09g00197 640 Gene3D - 1 92 IPR011993 -
Cca09g00197 640 Gene3D - 199 338 - -
Cca09g00197 640 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Cca09g00197 640 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 638 - -
Cca09g00197 640 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Cca09g00197 640 MobiDBLite consensus disorder prediction 455 475 - -
Cca09g00197 640 Gene3D - 339 447 IPR011993 -
Cca09g00197 640 MobiDBLite consensus disorder prediction 455 564 - -
Cca09g00197 640 MobiDBLite consensus disorder prediction 594 640 - -
Cca09g00197 640 Gene3D High mobility group box domain 539 633 IPR036910 -
Cca09g00197 640 CDD PH2_SSRP1-like 342 441 - -
Cca09g00197 640 CDD PH1_SSRP1-like 207 340 - -
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Cca09g00197 640 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 638 - -
Cca09g00197 640 Gene3D - 95 179 IPR038167 -
Cca09g00197 640 MobiDBLite consensus disorder prediction 506 547 - -
Cca09g00197 640 SMART hmgende2 555 625 IPR009071 -
Cca09g00197 640 MobiDBLite consensus disorder prediction 626 640 - -
Cca09g00197 640 Pfam Histone chaperone Rttp106-like 350 438 IPR013719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00197 Cca-Chr9 4087106 4093471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00197 552 624 ARID Transcription Factor Family AT1G04880 39.726 7.79e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca09g00197 POB3_N 1.7e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00197 K09272 - gmx:100780190 1174.07