Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00184 ATGGCGGAGAGCGGTGTCCGCAAGTGCCGCTGGGGCAAATGGTTCTCCGAAATTCGAGTGCCGCAGAAGAAGTCGCGGATATGGTTGGGGTCGTTTCTAGTGCTGGAGATGGCGACGCGAGCTTACGACGTGGCGGCCTTTTACCTCAAGGGCCAGAAGGTGCAACTCAACTTTCTCGATGAGGTTGAGTCCCTGTTGCTTCTACCGATGTGCACACCCACGGACATCCAGGCGGAGACGGCCAAGGCGGCGTGCACTAGCAAAGCCTCACGCGAAGAGAAGGGAGACATTGCCTCCAACGACGATTTTTGGGGCCCGATTGAGTTGCTGAAGGGGGGCCGCCGTCGAACGTGGCGGTGGCGCACGTGCCACTTTTGTTCCCAATTCGGAACCACTCCCACCAAACCCTAA 411 0.5864 MAESGVRKCRWGKWFSEIRVPQKKSRIWLGSFLVLEMATRAYDVAAFYLKGQKVQLNFLDEVESLLLLPMCTPTDIQAETAKAACTSKASREEKGDIASNDDFWGPIELLKGGRRRTWRWRTCHFCSQFGTTPTKP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00184 136 CDD AP2 5 58 IPR001471 GO:0003700|GO:0006355
Cca09g00184 136 Gene3D AP2/ERF domain 4 60 IPR036955 GO:0003700|GO:0006355
Cca09g00184 136 ProSiteProfiles AP2/ERF domain profile. 2 59 IPR001471 GO:0003700|GO:0006355
Cca09g00184 136 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 99 - -
Cca09g00184 136 Pfam AP2 domain 4 51 IPR001471 GO:0003700|GO:0006355
Cca09g00184 136 PRINTS Ethylene responsive element binding protein signature 41 61 IPR001471 GO:0003700|GO:0006355
Cca09g00184 136 PRINTS Ethylene responsive element binding protein signature 3 14 IPR001471 GO:0003700|GO:0006355
Cca09g00184 136 SMART rav1_2 5 65 IPR001471 GO:0003700|GO:0006355
Cca09g00184 136 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 5 99 - -
Cca09g00184 136 SUPERFAMILY DNA-binding domain 5 60 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00184 Cca-Chr9 3733232 3733642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00184 5 109 AP2-EREBP Transcription Factor Family AT1G01250 60.185 4.71e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca09g00184 AP2 2.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00184 K09286 - tcc:18613963 129.413