Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00180 ATGGGAAGGCCTCCTTGCTGTGACAAATCCAATGTGAAGAGGGGTCTTTGGACACCTGAGGAAGATGCTAAAATACTTGCCTATGTATCCAATCATGGAACTGGAAACTGGACATTGGTTCCAAAGAAAGCAGGGTTGAACAGGTGTGGTAAAAGCTGCAGGCTAAGATGGACCAACTACCTAAGACCTGATCTCAAGCATGATAGTTTTACTGCCCAAGAAGAAGAGCTCATTATTAACCTTCATGGAGCCATAGGAAGCAGATGGTCTTTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTGACTCATAAGCCAGTATCACAAGTCCTCTCTGACTTGGGAAGTATTAGTGGCCTCCCAAACACCTCCAACCAAATGGCTTTTGTGAACAAGGACTTGATGAGTAACATGTTACCAACAAAAACTGAACCATCAGGTTCCAACAAGTCCATGTTGGAGCACACACAAGAGGATCAAGTTCCCTCATGGGGGGAACACCAGGTTCCTTACCAAATCATCAACTCAGAAAATGTCTTGAGTGAAGTTGcatcctcaacctcatcctcatcttcctctaacctcaCACACTTAGGCTCACCAAAGTCCTACTCTTGCCAAACCACTCAGGCTCATGTTGCCCCTCTTAATTGTTCCTCCTTTGATTGGAGTGAGTTTCTCCAAAGTGACTCATTTGTGTGGTCTTTGAACCCCTCAGGTCTAATATTGCAAAGTGAAGCTGAACTTTCCAACAATACCAAAAGCAATAATGGCCATGACAAACAAGGAACTAGTAATCAGGGTTCTGGGGTTGTTGCTTGTGGTACAAGCATGCAACACCAAATTAACAAACAGTGTGAAGGCCATTCATTTGTGGATGGTATTTTGGACAGGGATAGTGAGATAAGAGCAGCATTCCCTGAACTTTTGGATGCTTCTTTTGACTACTAA 1017 0.4159 MGRPPCCDKSNVKRGLWTPEEDAKILAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTAQEEELIINLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPNTSNQMAFVNKDLMSNMLPTKTEPSGSNKSMLEHTQEDQVPSWGEHQVPYQIINSENVLSEVASSTSSSSSSNLTHLGSPKSYSCQTTQAHVAPLNCSSFDWSEFLQSDSFVWSLNPSGLILQSEAELSNNTKSNNGHDKQGTSNQGSGVVACGTSMQHQINKQCEGHSFVDGILDRDSEIRAAFPELLDASFDY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00180 338 CDD SANT 69 112 IPR001005 -
Cca09g00180 338 Gene3D - 7 67 - -
Cca09g00180 338 CDD SANT 17 61 IPR001005 -
Cca09g00180 338 SMART sant 66 114 IPR001005 -
Cca09g00180 338 SMART sant 13 63 IPR001005 -
Cca09g00180 338 MobiDBLite consensus disorder prediction 273 293 - -
Cca09g00180 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca09g00180 338 PANTHER F14D16.11-RELATED 1 338 - -
Cca09g00180 338 PANTHER F14D16.11-RELATED 1 338 - -
Cca09g00180 338 Gene3D - 68 131 - -
Cca09g00180 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca09g00180 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca09g00180 338 MobiDBLite consensus disorder prediction 160 180 - -
Cca09g00180 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca09g00180 338 MobiDBLite consensus disorder prediction 160 185 - -
Cca09g00180 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca09g00180 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca09g00180 338 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00180 Cca-Chr9 3664218 3666024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00180 1 338 MYB Transcription Factor Family AT3G28470 47.191 4.12e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00180 Myb_DNA-binding 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00180 K09422 - gmx:100815077 575.474