Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00175 ATGGATCTCCGCAACACGTTTTCCCCTTCCTTCTTCGTGCCCCTCTTCCTGGGCTTCAACCTATTCTTCTTCTTCGCTTCGTCGCAGGTCGACGACGACGTCAAATGTCTCCGCGGCATCAAGGACTCCCTCCACGACCCCGACGGTCGCCTCACCTCGTGGCGCTTCGACAACACCACCGTCGGTTTCATCTGCGACTTCGTCGGCGTGTCGTGCTGGAACCTCCGGGAGAATCGCGTCCTAGGTTTGCAGCTCCGTGAGTTCGGGCTCTCGGGTCGGATCCCGGAATCTTTGAAGTTCTGTGGGAAGAATCTCCAAAAGTTGGATCTTGCTACGAATTCTTTCTCGCCGGAGATCCCGCCTGAGATCTGCACTTGGATGCCGTTTTTGGTTTCGATTGATTTGTCTGGTAATCAGCTTTCTGGGCCTATTCCTCCCACGATTGTGAATTGTTCTTATTTGAATGACTTGGTGTTGTCGGATAATCAGCTTTCTGGGTCGATTCCATATGAGTTTGGGAGTTTGGGTAGGCTTAGGAAGTTTTCTGTGGCTAACAATAGGCTTAGTGGGACAATTCCTGATTTTTTCAATGGGTTTGATAGGGAGGGTTTTGAGGGGAATAGTGACCTTTGTGGGGGTCCTCTTGGATCCAAGTGTGGTGGGATGAGTAAGAAGAATCTTGCTATTATAATTGCTGCTGGGGTGTTTGGTGCTGCTGCTTCGTTGTTGCTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGAGTGGGAAGAGGAAGAAGGGGAAGGGCTATGGGCTtggtggtgttggggatggtgctgctgctgttggtggtggtgATTGGGCTGTCAGGTTGAGAGGGTATAAGCTTGTGCAGGTTAGTCTCTTTCAGAAGCCTATTGTGAAGCTCAAGTTGGGGGATTTGATGGCTGCTACTGGTAATTTCAGTGGGGAGAATGTTCTCTTCGCCACCAGGACCGGGACTACTTATAAGGCCGATCTTCCGGATGGCTCCACGCTCGCGGTGAAGCGGCTGAGTGCTTGTAAGATTGGGGAGAAGCAGTTTGGGATGGAGATGAACCGGCTCGGGCAGGTTCGCCACCCGAATTTGGCGCCATTGTTGGGGTTTTGTGTGGTGGAGGATGAGAAGCTGTTGGTGTATAAGCACATGTCGAATGGGACATTGTATTCGTTGTTGCATAAGAGTGGTGGTGGGGTGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGCGCGGCGAGGGGGCTTGCGTGGTTGCATCATGGCTGCCACCCTCCCATTATACAGCAGAACATTTGCTCAAGTGTGATACTTGTTGATGAGGAGTTTGATGCTCGGTTGATGGACTTTGGGCTGGCGAGGCTCATGGCGTCGGACTCAAATGGGAGTTTTGTGAATGGGGATTTGGGGGAGCTCGGGTATATAGCACCGGAGTATCCAAGTACCTTGGTTGCTTCGTTGAAAGGGGATGTGTATGGGTTTGGGGTTTTGCTTTTGGAGTTGGTGACCGGGCGAAAACCTCTTGAGGTGAGCAATGGGGAGGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAATGTGCATTCTAGTTCGGGCAGACTCAAGGATTGCATTGATAAAGCCATATGTGGAAGGGGACACGATGAGGAGATTCTGCAGTTTCTGAAAGTCGCTCTGAATTGTGTGGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAAGTTTATCATTCCTTAAAGACCATATCCAAAGACCACAGTTTCTCTGAACATGATGATGAATTCCCCTTGATCTTTGGAAAGCCAGAAAATGACACGGTGGCATAG 1848 0.493 MDLRNTFSPSFFVPLFLGFNLFFFFASSQVDDDVKCLRGIKDSLHDPDGRLTSWRFDNTTVGFICDFVGVSCWNLRENRVLGLQLREFGLSGRIPESLKFCGKNLQKLDLATNSFSPEIPPEICTWMPFLVSIDLSGNQLSGPIPPTIVNCSYLNDLVLSDNQLSGSIPYEFGSLGRLRKFSVANNRLSGTIPDFFNGFDREGFEGNSDLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLSGKRKKGKGYGLGGVGDGAAAVGGGDWAVRLRGYKLVQVSLFQKPIVKLKLGDLMAATGNFSGENVLFATRTGTTYKADLPDGSTLAVKRLSACKIGEKQFGMEMNRLGQVRHPNLAPLLGFCVVEDEKLLVYKHMSNGTLYSLLHKSGGGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSSVILVDEEFDARLMDFGLARLMASDSNGSFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGRKPLEVSNGEEEFKGSLVDWVNVHSSSGRLKDCIDKAICGRGHDEEILQFLKVALNCVVSRPKDRWSMYQVYHSLKTISKDHSFSEHDDEFPLIFGKPENDTVA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00175 615 SUPERFAMILY Protein kinase-like (PK-like) 292 586 IPR011009 -
Cca09g00175 615 ProSiteProfiles Protein kinase domain profile. 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00175 615 Gene3D Transferase(Phosphotransferase) domain 1 390 610 - -
Cca09g00175 615 SUPERFAMILY L domain-like 30 200 - -
Cca09g00175 615 Pfam Protein tyrosine and serine/threonine kinase 336 518 IPR001245 GO:0004672|GO:0006468
Cca09g00175 615 Gene3D Ribonuclease Inhibitor 30 221 IPR032675 -
Cca09g00175 615 PANTHER - 23 607 - -
Cca09g00175 615 PANTHER OS07G0107800 PROTEIN-RELATED 23 607 - -
Cca09g00175 615 Gene3D Phosphorylase Kinase; domain 1 276 389 - -
Cca09g00175 615 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00175 Cca-Chr9 3585401 3588054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00175 9 614 Receptor kinase-like Gene Family AT3G28450 62.764 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Cca09g00175 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00175 - - gmx:100814544 1019.22