Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00170 ATGCGTGCGGAGAAGAAAAATGGGTCTTTTCGATCAATTTTCATGCATGCTGATACATTGGATTGGTTTTACATGGTTTTGGGTACGTTTGGTGCCATTGGTGATGGCTTCACCACCCCTATCACCATGTACATCTTGAGTGGAATCATGAACAACATTGGTGATGCTTCCAAAAAGACACCAACTACTTTCATCCACAACGTTAATAAGTATTCAGTGATATTGTCCTACTTGGCTAGTGCGGCCTTTTTTGCTTCCTTCCTTGTTTTTTTTGGAGCAATTGAGCCAATGTATGCATTTTCAATGGGGTCCATGATATCAATTTTTTTCCTCACGGATCATGATGAGATTAAAAGGAAAATTGCAACCTATTGCATATTTTTTGCGGGGTTGACTGTGTTTCAATTGGTTGTTAATATCGTCCAACATTACAATTTGGCTTACATGGGAGAATACTTGACCAAAAGGGTCAAAGAGAGAATGCTTGCCAAGATACTCAGTTTTGAAGTTGCATGGTTCGATCAAGATGAAAATTCCACAGGTGTTGTTTGCTCTAGACTATCTACAGAAGCTAATATAGTGAGGTCTTTAGTGGGAGATAGAATGTCTTTGTTGCTACAAACTACCTCCGCCGTGGTAATAGCATGCACTGTGAGCCTAATCATTGCATGGAGATTTGCCATTGTATTGATAATTGTTCAACCTATATCCATTGCAAGTTTCTACACAAGAATTGTAATCCTAAAGGGCTTGTCTAAAAAGGCCATCAAAGCCCAAGATGAAAGTAGCAAAATAGCAGTTGAAGCTATTTCCAACCTTCGAACCATCACTTCCTTTTCCTCACAAGACCGAGTCATAAAAATGCTACAAAAAGCCCAAGAGGGCCCAAGCCATGAAAGCATTCGACAGTCATGGTTTGCTGGCATTGGGCTTGGATGTGCCCGAAGCCTTACAACTTTCAGTCGGGCTTTAGAATATTGGTATGGCGGAAATCTTGTTTACCATGGCCACATTACTTCAAAAGCATTGTTTGAGACCAATTTAATAATGGCAAATACTGGTAGGATGATAGCAGATGCTAGTAGTCTCACTAGTGACCTTGCTAAAGGAGCAAATGCCATTGGCCTAGTTTTCACAATCTTAGATAGAAACACAAAAATAGAGGCTGATGAAATGAGTGCATACAAGCCCCAAAAGTTAATAGGCCATATAGAACTCCAAAATGTTTATTTTGCATACCCATCAAGACCCAATGTGATGATCTTCCAAGACTTCTCCATCAAAATTGATGCAGGCAAATCCACAGCATTGGTAGGGGGAAGTGGGTCTGGAAAATCAACTATAATGGGCTTAATAGAGAGATTTTATGACCCACTTAAAGGGATAGTGACTATGGATGGTAGAGACATAAAGTCATATAACCTTAAGTCACTAAGGAACTACATTGCACTTGTGAGCCAAGAGCCAACACTTTTTAATGGGACCATAAGGGAAAACATTGCATATGGAGCATTTGATAAGACTAATGAAGTTGAGATCATTGAAGCAGCAAAGATAGCTAATGCTCATGACTTTATTGCAAGCATGAAGGATGGTTATGACACATGGTGTGGAGATAGAGGAGTGCAGTTATCTGGGGGCCAAAAGCAAAGGATTGCAATAGCCAGGGCTGTGTTGAAGAACCCAAAAGTGTTACTTTTGGATGAGGCCACCAGTGCACTTGATAGTCAATCCGAGAATGTAGTTCAAGATGCTTTGGAGAAAGTAATGGTAGGAAGGACCAGTGTGGTTGTGGCTCATAGGTTGAGCACCGTAAGGAATTGTAATCGAATTTTTGTATTGGATAAAGGAAGGGTTGTAGAAGAAGGGACTCATTCCTCTTTGTTGGCTAAGGGACCAAGTGGAAATTACTATTCTTTGGAAAACTGGTACCTAGAGTGGCACTTCGACGTATTGATAGTGTGGACTTTGGCAAAGACCGGAGAAATTTCTAAAGCAGATCTTCTAAAGGGCTTAAAAAACAGGGTTCTGAGGATGACTAAAAAGAAACAACAACGCATGCAGAGAGGAATGATGTACTATGAAGTGCCTTGTGATAGTTTGGATGTTTAA 2112 0.4034 MRAEKKNGSFRSIFMHADTLDWFYMVLGTFGAIGDGFTTPITMYILSGIMNNIGDASKKTPTTFIHNVNKYSVILSYLASAAFFASFLVFFGAIEPMYAFSMGSMISIFFLTDHDEIKRKIATYCIFFAGLTVFQLVVNIVQHYNLAYMGEYLTKRVKERMLAKILSFEVAWFDQDENSTGVVCSRLSTEANIVRSLVGDRMSLLLQTTSAVVIACTVSLIIAWRFAIVLIIVQPISIASFYTRIVILKGLSKKAIKAQDESSKIAVEAISNLRTITSFSSQDRVIKMLQKAQEGPSHESIRQSWFAGIGLGCARSLTTFSRALEYWYGGNLVYHGHITSKALFETNLIMANTGRMIADASSLTSDLAKGANAIGLVFTILDRNTKIEADEMSAYKPQKLIGHIELQNVYFAYPSRPNVMIFQDFSIKIDAGKSTALVGGSGSGKSTIMGLIERFYDPLKGIVTMDGRDIKSYNLKSLRNYIALVSQEPTLFNGTIRENIAYGAFDKTNEVEIIEAAKIANAHDFIASMKDGYDTWCGDRGVQLSGGQKQRIAIARAVLKNPKVLLLDEATSALDSQSENVVQDALEKVMVGRTSVVVAHRLSTVRNCNRIFVLDKGRVVEEGTHSSLLAKGPSGNYYSLENWYLEWHFDVLIVWTLAKTGEISKADLLKGLKNRVLRMTKKKQQRMQRGMMYYEVPCDSLDV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00170 703 SUPERFAMILY ABC transporter transmembrane region 76 383 IPR036640 GO:0005524|GO:0016021
Cca09g00170 703 Pfam ABC transporter 423 572 IPR003439 GO:0005524
Cca09g00170 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 642 IPR027417 -
Cca09g00170 703 Gene3D - 394 642 IPR027417 -
Cca09g00170 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 404 641 IPR003439 GO:0005524
Cca09g00170 703 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 87 369 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00170 703 Pfam ABC transporter transmembrane region 88 349 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00170 703 Gene3D ABC transporter type 1, transmembrane domain 90 372 IPR036640 GO:0005524|GO:0016021
Cca09g00170 703 Gene3D ABC transporter type 1, transmembrane domain 373 393 IPR036640 GO:0005524|GO:0016021
Cca09g00170 703 Gene3D ABC transporter type 1, transmembrane domain 4 88 IPR036640 GO:0005524|GO:0016021
Cca09g00170 703 CDD ABC_MTABC3_MDL1_MDL2 404 640 - -
Cca09g00170 703 SMART AAA_5 431 617 IPR003593 -
Cca09g00170 703 ProSitePatterns ABC transporters family signature. 544 558 IPR017871 GO:0005524
Cca09g00170 703 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 88 - -
Cca09g00170 703 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 90 647 - -
Cca09g00170 703 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 88 IPR039421 -
Cca09g00170 703 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 90 647 IPR039421 -
Cca09g00170 703 CDD ABC_6TM_Pgp_ABCB1_D2_like 82 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00170 Cca-Chr9 3348348 3362908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00170 2 640 Calmodulin-binding Proteins AT2G36910 34.844 3.11e-108 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00170 09 3348348 3362908 Cca09g00170 09 3348348 3362908 ECH