Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00169 ATGCAAAAAAAAAGTCAACATATTCTAAGTCATTCTATTTCTTCAAAATCAACGGGTCAATCTTCTCTTGTTGATGGTGATAGTGTTGAAAAAGTTAGTGATGATAGAAAACACACATCTCCTTCATTTTGGAAATTGTTAGCCTTGAATCTCCCTGAGTGGAAACAAGCATGTTTGGGGTGTTTGAGTGCAGTGTTTTTTGGAGCAATTGAGCCAATGTATGCATTTGCATTGGGGTCCATGATATCAATTTTTTTCCTCACGGATCATGATGAGATTAAAAGGAAAATTGCAACCTATTGCATATTTTTTGCGGGGTTGACTGTGTTTCAATTGGTTGTTAATATCGTCCAACATTACAATTTGGCTTACATGGGAGAATACTTGACCAAAAGGGTCAAAGAGAGAATGCTTGCCAAGATACTCAGTTTTGAAGTTGCATGGTTCGATCAAGATGAAAATTCCACAGGTGTTGTTTGCTCTAGACTATCTACAGAAGCTAATATAGTGAGGTCTTTAGTGGGAGATAGAATGTCTTTGTTGCTACAAACTACCTCCGCCGTGGTAATAGCATGCACTGTGAGCCTAATCATTGCATGGAGATTTGCCATTGTATTGATAATTGTTCAACCTATATCCATTGCAAGTTTCTACACAAGAATTGTAATCCTAAAGGGCATGTCTAAAAAGGCCATCAAAGCCCAAGATGAAAGTAGCAAAATAGCAGTTGAAGCTATTTCCAACCTTCGAACCATCACTTCCTTTTCCTCACAAGACCGAGTCATAAAAATGCTACAAAAAGCCCAAGAGGGCCCAAGCCATGAAAGCATTCGACAGTCATGGTTTGCTGGCATTGGGCTTGGATGTGCCCGAAGCCTTACAACTTTCAGTCGGGCTTTAGAATATTGGTATGGCGGAAATCTTGTTTACCATGGCCACATTACTTCAAAAGCATTGTTTGAGACCAATTTAATAATGGCAAATACTGGTAGGATGATAGCAGATGCTAGTAGTCTCACTAGTGACCTTGCTAAAGGAGCAAATGCCATTGGCCTAGTTTTCACAATCTTAGATAGAAACACAAAAATAGAGGCTGATGAAATGAGTGCATACAAGCCCCAAAAGTTAATAGGCCATATAGAACTCCAAAATGTTTATTTTGCATACCCATCAAGACCCAATGTGATGATCTTCCAAGACTTCTCCATCAAAATTGATGCAGGCAAATCCACAGCATTGGTAGGGGGAAGTGGGTCTGGAAAATCAACTATAATGGGCTTAATAGAGAGATTTTATGACCCACTTAAAGGGATAGTGACTATGGATGGTAGAGACATAAAGTCATATAACCTTAAGTCACTAAGGAACTACATTGCACTTGTGAGCCAAGAGCCAACACTTTTTAATGGGACCATAAGGGAAAACATTGCATATGGAGCATTTGATAAGACTAATGAAGTTGAGATCATTGAAGCAGCAAAGATAGCTAATGCTCATGACTTTATTGCAAGCATGAAGGATGGTTATGACACATGGTGTGGAGATAGAGGAGTGCAGTTATCTGGGGGCCAAAAGCAAAGGATTGCAATAGCCAGGGCTGTGTTGAAGAACCCAAAAGTGTTACTTTTGGATGAGGCCACCAGTGCACTTGATAGTCAATCCGAGAATGTAGTTCAAGATGCTTTGGAGAAAGTAATGGTAGGAAGGACCAGTGTCGTTGTGGCTCATAGGTTGAGCACCATAAGGAATTGTAATCGAATTGTTGTATTGGATAAAGGAAGGGTTGTAGAAGAAGGGACTCATTCCTCTTTGTTGGCTAAGGGACCAAGTGGAAATTACTATTCTTTGGTCAGTCTTCAAAGAAATGCAACAACAACCACTAGTGCAACTGATATCGAATACTAA 1905 0.3969 MQKKSQHILSHSISSKSTGQSSLVDGDSVEKVSDDRKHTSPSFWKLLALNLPEWKQACLGCLSAVFFGAIEPMYAFALGSMISIFFLTDHDEIKRKIATYCIFFAGLTVFQLVVNIVQHYNLAYMGEYLTKRVKERMLAKILSFEVAWFDQDENSTGVVCSRLSTEANIVRSLVGDRMSLLLQTTSAVVIACTVSLIIAWRFAIVLIIVQPISIASFYTRIVILKGMSKKAIKAQDESSKIAVEAISNLRTITSFSSQDRVIKMLQKAQEGPSHESIRQSWFAGIGLGCARSLTTFSRALEYWYGGNLVYHGHITSKALFETNLIMANTGRMIADASSLTSDLAKGANAIGLVFTILDRNTKIEADEMSAYKPQKLIGHIELQNVYFAYPSRPNVMIFQDFSIKIDAGKSTALVGGSGSGKSTIMGLIERFYDPLKGIVTMDGRDIKSYNLKSLRNYIALVSQEPTLFNGTIRENIAYGAFDKTNEVEIIEAAKIANAHDFIASMKDGYDTWCGDRGVQLSGGQKQRIAIARAVLKNPKVLLLDEATSALDSQSENVVQDALEKVMVGRTSVVVAHRLSTIRNCNRIVVLDKGRVVEEGTHSSLLAKGPSGNYYSLVSLQRNATTTTSATDIEY 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00169 634 CDD ABC_MTABC3_MDL1_MDL2 380 620 - -
Cca09g00169 634 SMART AAA_5 407 593 IPR003593 -
Cca09g00169 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 620 IPR027417 -
Cca09g00169 634 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 24 625 - -
Cca09g00169 634 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Cca09g00169 634 SUPERFAMILY ABC transporter transmembrane region 45 359 IPR036640 GO:0005524|GO:0016021
Cca09g00169 634 MobiDBLite consensus disorder prediction 6 26 - -
Cca09g00169 634 Pfam ABC transporter 399 548 IPR003439 GO:0005524
Cca09g00169 634 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 345 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00169 634 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 625 IPR039421 -
Cca09g00169 634 MobiDBLite consensus disorder prediction 1 26 - -
Cca09g00169 634 CDD ABC_6TM_Pgp_ABCB1_D2_like 47 363 - -
Cca09g00169 634 Pfam ABC transporter transmembrane region 58 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00169 634 Gene3D - 370 630 IPR027417 -
Cca09g00169 634 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524
Cca09g00169 634 Gene3D ABC transporter type 1, transmembrane domain 22 368 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00169 Cca-Chr9 3299720 3303564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00169 59 626 Calmodulin-binding Proteins AT2G36910 36.077 5.09e-109 355