Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00168 ATGAGTGTGGATCATCAGAACCATACTAGTGTTGATACGAAGAAGAAGAAGAAAAATGGGTCTAATATTGGATCCATTTTCATGCATGCAGATGGCGTAGATTGGTTTCTCATGGTTTTGGGTTTGTTTGGAGCCATTGGTGATGGATTCACCACTCCTGTTTCCTTGTACTGCACTGGCGGAATCATGAACAATATTGGTGATGTTTCTAAAATGTCACCAACTACTTTTATCCACAACGTTAATAAGAGGTGCTCTCTCACCTTGTCCTTGGGAATTACAGAGGGTTATTGCTGGACAAGAACAGGTGAAAGACAAGCTACAAGAATGAGAGTCAAGTATTTACGGGCAGTGTTGAGACAAGACGTAGCATACTTTGATTTGCATGTCACAAACACGTCCGAGGTCATTACCTGTGTCTCTACTGACAGCCTCGTAATTCAAGATGTTATTAGTGAAAAGGTTCCAAATTTCTTGATGAACTTCTCTAGGTTTGTTGGGAGCTACATAGTGGCTTTTACTATGTTGTGGAGATTGGCCATTGTGGGGTTTCCCTTTGTGGTGCTTCTTCTGATCCCTGGTTTAATTTATGGGAAGACCATGATGGGTTTGGCTAGAAAGATCAGAGAAGAGTGTAACAAAGCTGGTACAATAGCAGAACAAGCAATATCTTCCATAAGAACCGTTTATTCCTTTGTGGGGGAAAGTAAGACCATAGAAGCTTTCTCTGATGCTCTTCAAGGGTCTGTGAAATTAGGGTTGAGACAAGGCTTAGCTAAAGGCTTAGCCATTGGATGCAATGGTATTGTGTTTGCTATATGGTCTTTCATGTGCTATTATGGGAGTAGATTGGTCATGTATCATGGTGCTAAAGGAGGGACAGTATTTGCGGTTGGAGCAGTCATGTGTGTTGGTGGAAGGGCATTAGGTTGTTGTTTATCTGATTTCAAGTACTTTACAGAAGCATGTGCTGCTGGGGAACGCATAATGGTAATGGTAAAAAGAGTGCCAAAGATTGATTCTGAAAATATGGGTGGGGAGATTCTAGAGAAGGTTTCAGGAGAAGTAGAATTTGACCATGTCAAATTTGTGTATCCATCAAGGCCAGACAATGTTATTCTGAATGATTTTTGTCTAAAGATTCCAGCAGGGAAAACAATAGCTTTGGTTGGAGGAAGTGGCTCAGGAAAATCCACTACGGTGTCACTTTTGCAAAGGTTTTATGACCCAATTGAAGGAGAGATACGTGTTGATGGTGTGGCCATTCAGAAGTTTCAACTCAATTGGTTGAGGTCTCAGATGGGTTTGGTGAGCCAAGAGCCTACTCTGTTTGCAACAAGCATTAAGGAAAATATACTATTTGGAAGAGAGAGTGCCACTGATGAAGAAATTGTTGAGGCTGCTAAAGCTGCAAATGCTCATGATTTCATTTTACAATTGCCACAAGGATACAACACCCAGGTTGGAGAGAAAGGAGTTCAACTATCAGGTGGACAAAAGCAAAGGATTGCTATTGCGCGAGCAATAATAAAACATCCACAAATCCTTCTTCTTGATGAAGCAACAAGTGCACTAGACTCTGAATCTGAGCGCAAAGTTCAAGAAGCTCTTGATAAAGTTTCAGCAGGTCGAACCACTATTATCATAGCTCATCGCTTATCCACCATAAGGGATGCATATGTTATCGTTGCTTTACAAAATGGGAAGATCATTGAGATGGGTTCTCATGATGAGCTCATACAAAATGACAATGGGTTTTACACATCTCTTGTTCATTTTCAACAAGTTGAGAAATCAAAAAATGACACTCTCTTTCAACCTATTACATCAAATGGGGACACTCAAAAGACAAATAGTCATGTTGCAAGTCATTCTATTTGTGCAAATTCAGTGTCTCGATCTTCCCTTGGCATTGGAGATGATGCTGAAAAGGTTAGAGATCATGATCATAAAAGGCTCACATCTCCTTCATTTTGGAGATTGTTGGCCTTGAATCTCCCAGAGTGGAAACAAGCATGTTTGGGGTGTTCGAATGCAGTGTTATTTGGTGCAATTGAGCCGTTGTACGCATTTGCAACGGGCTCCATGATATCATTTTTTTTCCTTACAAATCATGATGAGATTAAAAGGAAAACTATAATTTATTCTCTACTTTTTGTGGGATTGGCAGTGTTTTCATTGGTTGTTAACATCATCCAACATTATAGTTTTGCTTATATGGGAGAGTACTTGACCAAAAGGATTAAAGAGAGAATGTTTTCCAAGATACTCAATTTCGAAGTTGGATGGTTCGATCGGGATGAAAATTCCACTGGTGTTGTTTGCTCTAGACTAACTAAAGAAGCCAATACAGTGAGGTCTTTAGTGGGAGATAGAATGGCACTATTGGTGCAAACTATCTCTGCTGTGGTAATGGCATGCACAATGGGCCTGATCATTGCATGGAGATTAGCCATCATGTTGATAGCAGTTCAACCTATTAATATTGCTTGCTTCTACACAAGACGTGTACTCCTCAAGCGTATGTCTAGAAAGACCATCAAAGCCTTGGATGAAAGTAGCAAAATAGCTGTCGAAGCTATTTCCAACCTTCGAACCATCACTGCCTTTTCCTCACAAGATCGAGTCATAAAAATGCTTGAAAAAGCCCAAGAAGGCCCAAGCCGTGAAAGCATTCGACAATCTTGGTTTGCAGGCATAGGGCTTGCATGTGCCCGAAGCCTCACAACTTACACTAGGGCTTTGGAATATTGGTATGGTGGAAAGCTTGTTTCATATGGCTACATTACTTCTAAAGCAATGTTTCAAACTTGTTTAATATTGGTTAACACAAGTAGGGTCATTGCCGATGCTAGTAGCCTCACTAGTGACCTTGCAAAAGGAGTAGATGCTGTTGGCTTAGTCTTTTCAATCTTAGATAGAAACACAAAAATCAAGCCTGATGAAACCAATGCATACCAACCCAAACAGTTAAAAGGCCACATAGAACTCCAAGATGTCTATTTTGCATACCCATCAAGATCCAATATGATGATCTTCCAAGCTTTCTCAATTAAAATTGATGCAGGCAAATCAACAGCAATGGTAGGGCAAAGTGGATCTGGCAAATCTACTATAATGGGCTTAATAGAGAGATTTTATGATCCACTTAAAGGGATAGTGACCATTGATGGTAGAGACATAAGGTCATATCACCTTAGGTCACTAAGGAATTACATTGCACTTGTGAGCCAAGAGCCAGCCCTTTTTAATGGGACCATAAGAGAAAACATAGCATATGGAGCATTTGATAAGACTAATGAAGTTGAGATCATTGAAGCAGCAAGGGTAGCTAATGCTCATGACTTTATTGCAAGTATGAAGGATGGTTATGAGACATGGTGTGGAGATAGAGGAGTACAATTATCTGGGGGCCAAAAACAGAGGATTGCAATAGCTAGAGCTGTGCTTAAGAATCCAAAAGTGTTGCTTTTGGATGAGGCTACTAGTGCACTTGATAGTCAATCAGAGAAAGTGGTTCAAGAAGCTCTAGAGAGAGTTATGGTAGGAAGGACGAGTGTGGTGGTGGCTCATAGACTGAGCACTATAAAAAATTGTGATCGGATTGTTGTGTTAGATAAAGGAAGGGTGGTAGAAGAAGGGACCCATTTGTCTTTGTTAGTAAAAGGACCAAGTGGAGTTTACTACTCTTTGGTAAGTCTTCAAAGAAGTGAGACAACAACAGCTAGTATTACTGATACAAAATACTCCACCAACTAA 3759 0.403 MSVDHQNHTSVDTKKKKKNGSNIGSIFMHADGVDWFLMVLGLFGAIGDGFTTPVSLYCTGGIMNNIGDVSKMSPTTFIHNVNKRCSLTLSLGITEGYCWTRTGERQATRMRVKYLRAVLRQDVAYFDLHVTNTSEVITCVSTDSLVIQDVISEKVPNFLMNFSRFVGSYIVAFTMLWRLAIVGFPFVVLLLIPGLIYGKTMMGLARKIREECNKAGTIAEQAISSIRTVYSFVGESKTIEAFSDALQGSVKLGLRQGLAKGLAIGCNGIVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGAVMCVGGRALGCCLSDFKYFTEACAAGERIMVMVKRVPKIDSENMGGEILEKVSGEVEFDHVKFVYPSRPDNVILNDFCLKIPAGKTIALVGGSGSGKSTTVSLLQRFYDPIEGEIRVDGVAIQKFQLNWLRSQMGLVSQEPTLFATSIKENILFGRESATDEEIVEAAKAANAHDFILQLPQGYNTQVGEKGVQLSGGQKQRIAIARAIIKHPQILLLDEATSALDSESERKVQEALDKVSAGRTTIIIAHRLSTIRDAYVIVALQNGKIIEMGSHDELIQNDNGFYTSLVHFQQVEKSKNDTLFQPITSNGDTQKTNSHVASHSICANSVSRSSLGIGDDAEKVRDHDHKRLTSPSFWRLLALNLPEWKQACLGCSNAVLFGAIEPLYAFATGSMISFFFLTNHDEIKRKTIIYSLLFVGLAVFSLVVNIIQHYSFAYMGEYLTKRIKERMFSKILNFEVGWFDRDENSTGVVCSRLTKEANTVRSLVGDRMALLVQTISAVVMACTMGLIIAWRLAIMLIAVQPINIACFYTRRVLLKRMSRKTIKALDESSKIAVEAISNLRTITAFSSQDRVIKMLEKAQEGPSRESIRQSWFAGIGLACARSLTTYTRALEYWYGGKLVSYGYITSKAMFQTCLILVNTSRVIADASSLTSDLAKGVDAVGLVFSILDRNTKIKPDETNAYQPKQLKGHIELQDVYFAYPSRSNMMIFQAFSIKIDAGKSTAMVGQSGSGKSTIMGLIERFYDPLKGIVTIDGRDIRSYHLRSLRNYIALVSQEPALFNGTIRENIAYGAFDKTNEVEIIEAARVANAHDFIASMKDGYETWCGDRGVQLSGGQKQRIAIARAVLKNPKVLLLDEATSALDSQSEKVVQEALERVMVGRTSVVVAHRLSTIKNCDRIVVLDKGRVVEEGTHLSLLVKGPSGVYYSLVSLQRSETTTASITDTKYSTN 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00168 1252 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1241 - -
Cca09g00168 1252 Pfam ABC transporter 374 523 IPR003439 GO:0005524
Cca09g00168 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1232 IPR003439 GO:0005524
Cca09g00168 1252 Gene3D ABC transporter type 1, transmembrane domain 963 1243 IPR036640 GO:0005524|GO:0016021
Cca09g00168 1252 SUPERFAMILY ABC transporter transmembrane region 32 330 IPR036640 GO:0005524|GO:0016021
Cca09g00168 1252 Gene3D ABC transporter type 1, transmembrane domain 26 962 IPR036640 GO:0005524|GO:0016021
Cca09g00168 1252 CDD ABC_MTABC3_MDL1_MDL2 995 1235 - -
Cca09g00168 1252 ProSitePatterns ABC transporters family signature. 495 509 IPR017871 GO:0005524
Cca09g00168 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 329 - -
Cca09g00168 1252 Gene3D - 985 1236 IPR027417 -
Cca09g00168 1252 Gene3D - 346 595 IPR027417 -
Cca09g00168 1252 Pfam ABC transporter transmembrane region 679 939 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00168 1252 Pfam ABC transporter transmembrane region 38 297 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00168 1252 Pfam ABC transporter 1015 1163 IPR003439 GO:0005524
Cca09g00168 1252 SUPERFAMILY ABC transporter transmembrane region 660 974 IPR036640 GO:0005524|GO:0016021
Cca09g00168 1252 SMART AAA_5 1022 1215 IPR003593 -
Cca09g00168 1252 SMART AAA_5 383 568 IPR003593 -
Cca09g00168 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 960 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00168 1252 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1241 IPR039421 -
Cca09g00168 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 592 IPR003439 GO:0005524
Cca09g00168 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1235 IPR027417 -
Cca09g00168 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Cca09g00168 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 594 IPR027417 -
Cca09g00168 1252 CDD ABC_MTABC3_MDL1_MDL2 356 594 - -
Cca09g00168 1252 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524
Cca09g00168 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 91 298 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00168 Cca-Chr9 3235533 3245438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00168 674 1242 Calmodulin-binding Proteins AT2G36910 36.475 6.83e-104 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00168 K05658 - gmx:100808241 1995.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00168 09 3235533 3245438 Cca09g00168 09 3235533 3245438 ECH