Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00165 ATGGGTGGTGGTGATGATCACAACAGTTCTGTTCCCATGGCTAGGAAGAATGGCTCTTTTAGGTCCATTTTCATGCATGCCGATGGCCTAGACTGGTGTCTCATGATTTTGGGTCTGATTGGGGCCATTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTGTCACCAGCCATATTATGAACAATATTGGTGATTTTTCTAGCGACAAAGGCAGCACTATCATCCACAGCGTCAACAAGAATGCTGTGGTGTTGTTATACCTGGCCGGTGGGTCTTTTGTTGCTTGTTTCTTAGAGGGTTATTGTTGGACAAGAACTGGTGAAAGACAAGCTGCAAGAATGAGAGTCAAGTATCTAAAAGCAGTGCTAAGGCAAGAAGTAGCATACTTCGACTTGCATGTCACAAGCACATCTGAGGTCATCACCAGTGTCTCCAATGACAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCGAATTTTTTGATGAATGCCTCTATGTTTGTTGGGAGCTACATAGTGGCTTTTGCACTATTATGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGCTCTACTTGTGATCCCTGGTTTTATGTACGGGAGGACACTAATGGGGTTGGCCAGCAAGATAAGAGAAGAGTACAACAAGGCTGGCACCATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTTGGGGAAAGCAAGACCATAGATGCTTTCTCTGATGCTCTTAAAGGCTCTGTTGAGTTGGGTCTGAGACAAGGCTTAGCAAAAGGCTTGGCCATTGGAAGCAATGGTGTTGTCTTTGCTATATGGGCTTTCATGTCCTACTATGGTAGCAGATTGGTCATGTACCATGGGGCTAAAGGTGGGACTGTGTTTGCAGTTGGAGCAGCCATAGCTCTTGGTGGATTAGCATTAGGTTCTGGGTTATCGAACGTGAAGTACTTCTCAGAAGCAAGCACTGCAGGAGAACGCATAATGGAGGTGATAAAAAGGGTTCCAAAGATTGATTCGGCGAACATGGGTGGTGAGATTCTGGAGAACGTTTCAGGGGAAGTGGAGTTCGAGCACGTAAACTTTGCGTACCCATCAAGGCCAGAGAGTGTTATTCTGAACGATTTCAGCCTAAGGGTTCCAGCAGGGAAAACAGTGGCACTGGTTGGAGGGAGTGGCTCAGGAAAATCCACTGTGGTGTCACTTTTGCAAAGGTTTTATGACCCAATTGAGGGAGAGATACGTGTGGATGGTGTGGCCATTCATAGGTTGCAACTCAAGTGGTTGAGGTCTCAGATGGGGTTGGTGAGCCAAGAGCCTGCACTGTTTGCAACCAGCATTATGGAGAATGTGCTCTTTGGAAGAGAGGATGCCACTCAGGAAGAGGTTCTCCAGGCTGCCAAGGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCACAAGGGTATCATACTCAGGTTGGAGAGAGGGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCAAGAGCAATAATTAAAAAGCCACGAATTCTCTTGTTGGACGAAGCTACAAGTGCCCTAGATTCTGAATCTGAACGAGTAGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGACGCACCACCATAATCATCGCTCATCGATTATCCACCATAAGAAACGCAGATGTGATCGCTGTGGTGCAAAATGGGAAGATCATGGAGATGGGGTCACACCATGAACTAATCGAAAATGACAATGGTCTCTACACTTCACTAGTTCGTCTCCAACAAGCGAAAAACGAAAAAGAAGAAACCCATTtccaccttcctcctcctcctcttcctTCATCATCTATATCAAACAAAGACATTCACAACTCAAGCAGTCGTAGACTCTCCCTTGTGAGTCGTTCCAGCTCCGCAAACTCGATCTCTCGAGTTGGCGGTGCTGGCGATGATGTTGTTGAAGAGGTTGTTGTGGAAGATATGAAGCTTCCACTTCCCTCGTTTCGAAGGTTGCTAGCATTGAACATTCCCGAGTGGAAGCAAGCGTGTTTAGGATGTTTGAATGCTGTGTTGTTTGGTGCAATTCAGCCTGTGTATGCATTTGCGATGGGGTCGGTGATATCTGTTTACTTTCTCCAAGACCATGATGAGATAAAGAGGAAAACCATGATCTATTCACTTTGCTTCCTAGGGTTGGCTGTGTTTTCCTTGGTGGTTAATATTCTCCAACACTATAATTTTGCTTACATGGGAGAGTACTTGACTAAGAGGGTCAGAGAACGAATGCTTTCTAAGATACTCACTTTTGAAGTTGGATGGTTTGATCAGGATGAAAATTCCACTGGTGCTGTTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTGAGGTCTTTAGTTGGAGACAGAATGGCTCTAGTGGTGCAAACTATTTCTGCAGTGGTAATAGCTTTTACTATGGGCCTAATCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAGCCCATTATCATTGCTTGCTTCTACACAAGGCGTGTCCTTCTCAAGAGCATGTCAAGCAAGGCCATCAAGGCCCAAGATGAATGCAGCAAGATAGCTGCCGAAGCTGTTTCCAACCTTAGAACAATCACAGCCTTTTCTTCTCAGGACAGGATCCTCAAAATGCTCGAAAAAGCCCAAGAAGGCCCAAGTCGTGAAAGCATTCGACAGTCATGGTTCGCAGGTGTAGGCCTTGCATGTTCCCAAAGCCTCACATTTTGCACTTGGGCTTTGGACTTTTGGTATGGTGGAAAGCTTGTGTTTCATGGCTACATCAATGCCAAAGCATTGTTTGAGACCTTCATGATCTTGGTGAGCACAGGAAGGGTGATTGCAGATGCTGGAAGCATGACCAATGACTTAGCCAAAGGTGCTGATGCTGTGGGCTCAGTTTTTGCAATCTTGGACAGGTACACAAAAATTGAGCCTGATGACCTAGATGGGCTCAAGCCTGAGAAATTAACAGGAAAGATAGAGCTTCATGATGTTCATTTTGCATACCCAGCTAGGCCCAATGTGATGATCTTCGAAGGCTTCTCAATCAAAATTGATGCAGGGAAATCCACAGCTTTGGTAGGGCAAAGTGGGTCTGGAAAGTCAACAATAATCGGCCTAATTGAGAGATTCTATGACCCTTTGAAAGGGACTGTGACCATAGATGGTAGGGACATAAAATCATACCACCTTAGGTCACTAAGGAAGCACATTGCTCTTGTGAGCCAAGAACCAACACTGTTTGGTGGGAGCATAAGGGAAAACATTGCATATGGGGGACCTAACAAGATTGATGAAAGTGAGATCATGGAAGCAGCAAGGGCAGCCAATGCTCATGATTTCATCGCAAGCCTGAAGGATGGTTATGACACATGGTGTGGTGATAGAGGAGTGCAACTCTCTGGGGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCCATATTGAAGAACCCTGAGGTGTTGTTGTTGGATGAAGCCACTAGTGCCCTAGATAGCCAATCAGAGAAACTGGTGCAAGATGCCCTAGAAAGGGTGATGGTGGGGAGAACCAGTGTGGTGGTGGCTCACAGGTTGAGCACAATACAAAACTGTGATCAAATCGCTGTGTTGGATAAGGGAAAGGTTGTGGAGAAAGGAACCCACTCGTCTTTGTTGGCTGAGGGGCCAAGTGGAGCTTATTACTCTTTGGTGAATCTACAAAGAAGACCAACCAAACATGAAGGTTAA 3774 0.4518 MGGGDDHNSSVPMARKNGSFRSIFMHADGLDWCLMILGLIGAIGDGIGTPLVLFVTSHIMNNIGDFSSDKGSTIIHSVNKNAVVLLYLAGGSFVACFLEGYCWTRTGERQAARMRVKYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVAFALLWRLAIVGFPFVALLVIPGFMYGRTLMGLASKIREEYNKAGTIAEQAISSIRTVYSFVGESKTIDAFSDALKGSVELGLRQGLAKGLAIGSNGVVFAIWAFMSYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGSGLSNVKYFSEASTAGERIMEVIKRVPKIDSANMGGEILENVSGEVEFEHVNFAYPSRPESVILNDFSLRVPAGKTVALVGGSGSGKSTVVSLLQRFYDPIEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATSIMENVLFGREDATQEEVLQAAKASNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQNGKIMEMGSHHELIENDNGLYTSLVRLQQAKNEKEETHFHLPPPPLPSSSISNKDIHNSSSRRLSLVSRSSSANSISRVGGAGDDVVEEVVVEDMKLPLPSFRRLLALNIPEWKQACLGCLNAVLFGAIQPVYAFAMGSVISVYFLQDHDEIKRKTMIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDECSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFHGYINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDLDGLKPEKLTGKIELHDVHFAYPARPNVMIFEGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYHLRSLRKHIALVSQEPTLFGGSIRENIAYGGPNKIDESEIMEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLAEGPSGAYYSLVNLQRRPTKHEG 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00165 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Cca09g00165 1257 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 1253 IPR039421 -
Cca09g00165 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 598 IPR027417 -
Cca09g00165 1257 Pfam ABC transporter transmembrane region 35 302 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00165 1257 Pfam ABC transporter transmembrane region 688 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00165 1257 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Cca09g00165 1257 Pfam ABC transporter 1029 1177 IPR003439 GO:0005524
Cca09g00165 1257 SMART AAA_5 387 573 IPR003593 -
Cca09g00165 1257 SMART AAA_5 1036 1229 IPR003593 -
Cca09g00165 1257 MobiDBLite consensus disorder prediction 602 626 - -
Cca09g00165 1257 Gene3D ABC transporter type 1, transmembrane domain 84 978 IPR036640 GO:0005524|GO:0016021
Cca09g00165 1257 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 20 1253 - -
Cca09g00165 1257 Gene3D - 999 1256 IPR027417 -
Cca09g00165 1257 Gene3D - 358 620 IPR027417 -
Cca09g00165 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00165 1257 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
Cca09g00165 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1249 IPR027417 -
Cca09g00165 1257 CDD ABC_MTABC3_MDL1_MDL2 1009 1249 - -
Cca09g00165 1257 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Cca09g00165 1257 SUPERFAMILY ABC transporter transmembrane region 31 341 IPR036640 GO:0005524|GO:0016021
Cca09g00165 1257 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Cca09g00165 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Cca09g00165 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Cca09g00165 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1246 IPR003439 GO:0005524
Cca09g00165 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 693 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g00165 1257 SUPERFAMILY ABC transporter transmembrane region 670 993 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00165 Cca-Chr9 3131257 3141982 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00165 19 1250 Calmodulin-binding Proteins AT2G36910 45.498 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00165 K05658 - gmx:100807709 2133.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00165 09 3131257 3141982 Cca09g00165 09 3131257 3141982 ECH