Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00162 ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCCCTCAATTCAAACGCCCCTTTGCTTCATCACGTGCTGATTCCTATGGACAAAACCAAGTTCCtggaagtggaggaggaggtggtggtggaggaggaggcggaggtggcaatggaggaagtgttggtgggggagCAACTACATCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGTTATTCAAAGGTCACAACAATTTGATTTTTGGATTTAACACTTTCCTACCAAAGGGTTATGAGATAACTCTTGATGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATCAGTTTTGTGAATAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAATATGTATCGCAAAGAGCATAAGGACATTGGGGAGGTTTATAGTGAGGTTGCTACTCTTTTCAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGGAATTCATTGCAGCGCTTCAATGAGCGGAGTTCTATGGCTCCAATGATACGGCAAATGCCAGCCGACAAGCAACGATACCGACGAGACCGGCTTCCTTCTCATGATCGTGACCGTGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAAACAATGTTGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACATGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAGTCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCTGACTTTACTTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAGAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGCCATTATCTACTGATGCTCATTTATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGCACAAGCGTGATATAGATGGAGGTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCCAGCTACCGGCTTCTGCCTGCAGATTATCCAATTCCTACAGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGTAGAAATCAGTATGAGGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCGGCTGCTAAACGTGCAGAGGAATTGTATAATAATATCAATGAAAATAAAATCAGTGTGGAGACTCTAAACCGTGTTGAAGATCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGATCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCATCCCATGCCCTTCCTGTAATCATGACCCGTCTGAAGCAAAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAACAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTTGCTGAGATTAAAGAAATTAAAGAGAAGCAACAGAAAGAGGATGATATTATTCAGTCTATTGCTGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATCCTGACGCTGGGATTCACGAAGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAATCTCATGGGACAGAAAGGGTGGAGGACAGAAAAAATGGCCATAATGTTCGCGGTTTTGTTGCACCAAATACAAGGGGTGATGGAAGCCCTCGTGGAGATTCTCTTTCAATAAATTCAAGGCTGCCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACCGGACTAGTGCAGCAGCCAGTGATAAAGAAAATGGATCTGTTGAACTTGTTTGTAGAGATGATCCATTAATGGATAAAGGACAGAAAAATGTAGAATGCAACGATAAAGCCTCTGGATTTAGCAAACAATTTACCTCTGATGAACAGGGAGCTAAAAACAGCATATCAGTTCCAATTAGAGGAGAAAACAGCCTGAACAGAACCAACTTAGATGCGTCTCCAGGTCGTTCCCATACTCCATCACGACCTACTGATGTTGATGACTCTGTAGCCAAGTCTCAGGGTGTTAATGTACCATTGGTGGAGGGAAGTGACATGGCAACACCAGTACCAGTGGCCAATGGTGTTCTAAGTGAAAGCAGTAAAGTTAAAACTCATGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAGTTATCACCAAATGGTGACTCGGAGGATAATAACTGTGTTGCCTATGGAGATTCAAATGTGCAGTCAACAGCCAAGTCAAAACACAACATTGAAAGAAGGAAATATCAATCTAGAAATGGAGAAGATGAATGTTGTCCTGAGGCTGGAGGAGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAAGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCGTGTATCAGCAGTTTCATTTGTTGAAGATATGAAAGATTCTAGTGTGTTCTATGGAAATGATGATTTCTATGTGCTTTTTAGACTTCATCAGACTCTTTATGAGAGGATCTTATCAGCAAAAACAAATTCAATGAATACAGAAATGAAATGGAAAGCAAAGGATGCTAATTCACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTCGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGTGCAATTATTGGCAACCAATCATATGTGTTATTCACCTTGGACAAGTTAATATACAAATTAATCAGACAGTTGTCTACCCCCTCTCGACTATCCATCCAGCTCATGGACAACATGAATGAAAAGCCTGAGTTGCTTGCCGTATCTATTGATCCGAATTTCTCGTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCATGCAAAAAAGAACCCCATGGCATTATACTGCATAGAAACAAACGCCAATATGGACACTTAGATGAGCTTTCTGCAATATGCTCTGCAATGGAAGGTGTTAAAGTAATCAATGGACTGGAATGTAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGACCGAGGAAGAAGAGACGAACATCATCAGGGACCACGACCTCCCGGTTTCGAAGGGACAGAGAGGAAAGATTCCGCAAATTGTTAGCATGCTCATAA 4035 0.3988 MKRARDDMYSASAPQFKRPFASSRADSYGQNQVPGSGGGGGGGGGGGGGNGGSVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSMAPMIRQMPADKQRYRRDRLPSHDRDRDMSAERPELDDDKTMLNIHKEQRKRESRDRRMRDQDEREHDLDNSRDLNLQRFPDKKKSVKKAEGFGMASDFTSYDDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKPLSTDAHLSRSSKLEDKDKEHKRDIDGGKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRVEDHFTVLNLRCIERLYGDHGLDVIDILRKNPSHALPVIMTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERVEDRKNGHNVRGFVAPNTRGDGSPRGDSLSINSRLPKSDKNEADGRVTEVKNVHRTSAAASDKENGSVELVCRDDPLMDKGQKNVECNDKASGFSKQFTSDEQGAKNSISVPIRGENSLNRTNLDASPGRSHTPSRPTDVDDSVAKSQGVNVPLVEGSDMATPVPVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEDNNCVAYGDSNVQSTAKSKHNIERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKRVSAVSFVEDMKDSSVFYGNDDFYVLFRLHQTLYERILSAKTNSMNTEMKWKAKDANSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLIRQLSTPSRLSIQLMDNMNEKPELLAVSIDPNFSFYLHNDFLSVFPCKKEPHGIILHRNKRQYGHLDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTSSGTTTSRFRRDREERFRKLLACS 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00162 1344 SUPERFAMILY PAH2 domain 143 215 IPR036600 GO:0006355
Cca09g00162 1344 MobiDBLite consensus disorder prediction 1043 1058 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 440 462 - -
Cca09g00162 1344 ProSiteProfiles PAH domain profile. 348 417 IPR003822 GO:0006355
Cca09g00162 1344 MobiDBLite consensus disorder prediction 987 1006 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 216 240 - -
Cca09g00162 1344 Coils Coil 554 574 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 966 986 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 803 817 - -
Cca09g00162 1344 Pfam Paired amphipathic helix repeat 169 213 IPR003822 GO:0006355
Cca09g00162 1344 Pfam Paired amphipathic helix repeat 370 414 IPR003822 GO:0006355
Cca09g00162 1344 Pfam Paired amphipathic helix repeat 85 129 IPR003822 GO:0006355
Cca09g00162 1344 Gene3D Paired amphipathic helix 145 217 IPR036600 GO:0006355
Cca09g00162 1344 SMART hdac_interact2seq4b 481 581 IPR013194 -
Cca09g00162 1344 Pfam C-terminal domain of Sin3a protein 1115 1211 IPR031693 -
Cca09g00162 1344 Pfam C-terminal domain of Sin3a protein 1213 1311 IPR031693 -
Cca09g00162 1344 Gene3D Paired amphipathic helix 68 130 IPR036600 GO:0006355
Cca09g00162 1344 MobiDBLite consensus disorder prediction 250 321 - -
Cca09g00162 1344 SUPERFAMILY PAH2 domain 351 417 IPR036600 GO:0006355
Cca09g00162 1344 MobiDBLite consensus disorder prediction 438 462 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 860 911 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 941 964 - -
Cca09g00162 1344 Gene3D Paired amphipathic helix 346 419 IPR036600 GO:0006355
Cca09g00162 1344 PANTHER SIN3B-RELATED 1210 1329 IPR039774 GO:0003714
Cca09g00162 1344 PANTHER SIN3B-RELATED 1 1212 IPR039774 GO:0003714
Cca09g00162 1344 MobiDBLite consensus disorder prediction 1 60 - -
Cca09g00162 1344 SUPERFAMILY PAH2 domain 60 131 IPR036600 GO:0006355
Cca09g00162 1344 MobiDBLite consensus disorder prediction 758 833 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 860 1067 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 216 321 - -
Cca09g00162 1344 MobiDBLite consensus disorder prediction 1007 1027 - -
Cca09g00162 1344 Pfam Sin3 family co-repressor 483 575 IPR013194 -
Cca09g00162 1344 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1210 1329 - -
Cca09g00162 1344 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1212 - -
Cca09g00162 1344 ProSiteProfiles PAH domain profile. 62 132 IPR003822 GO:0006355
Cca09g00162 1344 ProSiteProfiles PAH domain profile. 146 216 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00162 Cca-Chr9 3061766 3072167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00162 47 165 WRKY Transcription Factor Family AT4G12020 50.000 5.41e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca09g00162 Sin3a_C 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00162 K11644 - gmx:100807181 2323.51