LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00149	ATGGATTTTGTTCTAAATTACCTAAATGCAACTGCCATTGGACTTCTTTCTCTAATTCTCTTTTGTTTGTTTTTGTATCGTCCCTTCAAATTTGGTCATAATAAAGAGGCTCCCATGGTTGCAGGTGCATGGCCAATACTTGGCCACCTCCCGTTGTTGAGTGGTTCTCAAAGACCACATAGAACTTTGGGTGCTTTGGCTGACAAGTACGGGCCCGTATTCACTATCAAGCTTGGTGTCAAAGAGGCTTTGGTAATCAACAACTGGGAAGTGGCTAAGGAATGCTTTACCACAAATGACATTGTTGTTTCCTCTCGCCCTAAGCTTGTTGCCGTTGAGCACTTAGGCTACAACCAAGCTTTGTTACCCGTAGCACCCTATGGTCCTTATTGGCGTGAGCTACGAAAGATTACAACATCAGAGATTCTTTCCAATCGCCGAATAGAGGAACTACAACCTGTTCGTGTGACAGAAGTTCAAACTTCGATTAAGGAGCTCTTCAATGTCTGGAGTAGAACAAAGAACGAATCTGGTTATGCGTTGGTGGATCTGAAGCAATGGTTTTCTCATTTGACATTCAACATTATTTTTCAGATGGTCATTGGAAAGCGATACTTTAGTGTTGCAACTAAGGATGATGAGAAGGCACAAAGATTTGTAAAAGCCGCGAAGGAGTTCATCCGTCTGTTTGGCGTGTTCACAGTGGGAGATGCTATTCCTTATTTGAGATGGTTTGATTTTGGTGGCCATGAGAAGGCCATGAAAGAAACTGGCAAGGAATTTGATAGTATATTAAGTGAGTGGTTAGAGGAGCATCGACAAAATAGGGCTTTGGGTGAGAATATTCAAGACTTCATGGATGTGATGATTTCCTTGCTTGATGGAAAAACAATTGAAGGGATAGATGCCGATACCATCATCAAATCCACCGTAGAGACGATAATTTTGGGCGGAACTGACACGAGCAGTAGCACTCTTACATGGGCAATAAGTTTGGTATTGAGAAATCCTCTTGAATTAGAAAAAGTTAAAGAAGAACTTGACATCCAAGTTGGAAAACAAAGATGTGTATGTGAGTATGATGTAAGTAAGTTAACGTATCTTCGGGCCATAGTCAAAGAAACTTTGAGATTATACCCTCCTGTTCCCCTCTCTGCTCCTCGTGAATTCACAGATGATTGCATTTTAAGAGGATACAATATCAAGAAAGGAACCCGTCTAATTACGAATCTTTGGAAAATTCATACAGATTGTAATGTTTGGTCAGATCCATTAGAGTTTAAACCGGAAAGGTTTCTTACAACTCATAAAGATATTGATATCAGGGGTCATCATTTTGAGCTATTACCATTCGGAAGTGGTAGAAGGGTTTGTCCTGGAATATCCTTTGGCCTTCAAACTATTCATTTTACTCTTGCAAGTCTTTTGCATTCCTTCGAGATCTTAAATTCATCAACTGAACCAATTGATATGACTGAACTCTTCGGAGTAACCAATGATAAAGCCACTCCACTTAAGATTCTTATTAAACCACGATTATCTCCTAGTTCTTCTGAAAGCTTGTAA	1566	0.4004	MDFVLNYLNATAIGLLSLILFCLFLYRPFKFGHNKEAPMVAGAWPILGHLPLLSGSQRPHRTLGALADKYGPVFTIKLGVKEALVINNWEVAKECFTTNDIVVSSRPKLVAVEHLGYNQALLPVAPYGPYWRELRKITTSEILSNRRIEELQPVRVTEVQTSIKELFNVWSRTKNESGYALVDLKQWFSHLTFNIIFQMVIGKRYFSVATKDDEKAQRFVKAAKEFIRLFGVFTVGDAIPYLRWFDFGGHEKAMKETGKEFDSILSEWLEEHRQNRALGENIQDFMDVMISLLDGKTIEGIDADTIIKSTVETIILGGTDTSSSTLTWAISLVLRNPLELEKVKEELDIQVGKQRCVCEYDVSKLTYLRAIVKETLRLYPPVPLSAPREFTDDCILRGYNIKKGTRLITNLWKIHTDCNVWSDPLEFKPERFLTTHKDIDIRGHHFELLPFGSGRRVCPGISFGLQTIHFTLASLLHSFEILNSSTEPIDMTELFGVTNDKATPLKILIKPRLSPSSSESL	521

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00149	521	SUPERFAMILY	Cytochrome P450	43	512	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	P450 superfamily signature	317	334	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	P450 superfamily signature	370	381	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	P450 superfamily signature	449	458	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	451	460	IPR017972	GO:0005506\|GO:0016705
	Cca09g00149	521	PRINTS	E-class P450 group I signature	67	86	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	E-class P450 group I signature	91	112	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	E-class P450 group I signature	191	209	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	E-class P450 group I signature	306	323	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00149	521	PRINTS	E-class P450 group I signature	326	352	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00149	Cca-Chr9	2759743	2762267	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00149	37	513	Cytochrome P450	AT4G31940	50.820	2.93e-176	505

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00149	-		-	gmx:100803451	821.231

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