Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00143 ATGGCTTCAGGGGGAACAGAAGCTTTCCCAGATTTGGGTAAACACTGTCAGCATCACGATTGCAACCAGCTTGATTTTCTTCCTTTCACCTGCCACGGTTGCCAACAGGTGTTTTGTTTGGAACATAGATCCTACAAGTCCCACGCGTGCCCGAAATCCGACCACAACAGCAGGAAGGTGGTTGTTTGCGAAGCGTGTTCCATGTCCATTGAGACCACCGGCCACGTGGCACAAGACGAGGTGGCAATCTTGGAGAGCCACCTCAAGTCTGGTAACTGCGACCCCACCAAGAAGAAGAAACCCATTTGCCCTGTCAAACGCTGCAAGGGGGTTTTGACGTTTTCCAACACCAGCACATGTAAAACTTGCCACATCAAAGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGTAGCAGAGGAGCTTCAGCTTCTTCCTCGTCTTCTGTGGATAATGGTCGGTGGAACAATCGGTTCTTGGCTGCTCTGGCTTCAAGAACTGGACAAGACTGTGCCAACCCTGCTAAATCTCGTTCTACTTCTACTCCTAGCACTCCTTCTGTTAAGGCATATTGA 579 0.5026 MASGGTEAFPDLGKHCQHHDCNQLDFLPFTCHGCQQVFCLEHRSYKSHACPKSDHNSRKVVVCEACSMSIETTGHVAQDEVAILESHLKSGNCDPTKKKKPICPVKRCKGVLTFSNTSTCKTCHIKVCLKHRFPADHACSRGASASSSSSVDNGRWNNRFLAALASRTGQDCANPAKSRSTSTPSTPSVKAY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00143 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Cca09g00143 192 SUPERFAMILY AN1-like Zinc finger 95 142 IPR035896 -
Cca09g00143 192 SUPERFAMILY AN1-like Zinc finger 9 61 IPR035896 -
Cca09g00143 192 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 179 - -
Cca09g00143 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Cca09g00143 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Cca09g00143 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 179 - -
Cca09g00143 192 Gene3D - 79 155 IPR035896 -
Cca09g00143 192 Gene3D - 2 69 IPR035896 -
Cca09g00143 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Cca09g00143 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Cca09g00143 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Cca09g00143 192 MobiDBLite consensus disorder prediction 171 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00143 Cca-Chr9 2605699 2606707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00143 1 172 C2H2 Transcription Factor Family AT3G28210 61.628 1.22e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00143 - - gmx:100500384 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00143 09 2605699 2606707 Cca09g00143 09 2605699 2606707 ECH