Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00142 ATGAGAGAGCTCCACCATCCCATGGAGATTCAACTCAAAAAATGGCCATCACCCAAAATGACACCAAAAGAGTCACCACAACCACAACCAATAGCCACCAAGCTGAAATGGAAGAAAATCTTCTTCCACACAAAATCCAAAACCAAAACCCCACCAGAAGAGTTCCTCTGCCCCCTTTCCCGCTCCCTCATGTCCGACCCCGTCATCGTCTCCTCCGGTCACTCCTTCGAACGCGCCGCCGTGGAAGCCTGTAAAAATCTAAACTTTACCCCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACGCTCATTCCCAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCCAAACCACCCAAACACCCCCTCCACACCCCCCCAACAACAACCTCGTACAAACCTTAATCCCCTCCACCCCAAACCTCATACCCTCCGACAAAGATTCCATTTTTAACCAAAACCCACACCACCACGCCGAAACCGAAATCCCCATTAGACCCACACACTTGTACTCGAGCTCCGAGGAATCCATAGCGACAACCTCAGCCTCCACGCCGCCGCTGCAACTCTCCACGCGCCGCAGTTGCTGCTGCTCCTCCTCCCCTTCTTCATCGGAGCTGGAACCCGCCACAACCCCAGAAGAAGAAGAAATCACCACAAGCCTCAAAAACCCCAATTTCGACGTAGTCGAAGAAACACTCCTCTCTCTCAGAAAACTAACCAGAGTGAGAGAAGAAACAAGACTCCAACTTTGCACGCCACGTGTCCTCTCCGCGTTGCGTTCCCATGTTTTATCGAAACACGCGAACGTTCAAGTGAACGCTCTCGCCTCGCTGGTGAACCTCTCGCTGGAGAAAACCAACAAGGTGAAGATCGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGAATGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCCTTGTTCAGTTTATCTCTCGACGATGCTAACAAAACCGCCATTGGGGTTTTGGGTGGTTTGGCGCCGTTGCTTCACATGCTCCGATCCGACAACGAGTTGACTCGCCACGACTCGGCCTTGGCGCTTTATCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAGCTCGGTTCGGTTCCGGTTCTTTTGAAAATGGCTAAGGCGGGTCACATGACGGGTCGGGTTTTATTAATTTTGGGAAACTTGGGTTCCGGGTCGGACGGGCGGGCCGCGATGTTGGATGCGGGTGTGGTGGAGTGTTTGGTCGGGTTACTGAGTCGGGCCGAGTTGACCAGGTCGACTCGGGAGAGCTGTGTGGCGGTGATGTACGCGCTGAGTCATGGCGGTTTGCGGTTCAAGGCGGTGGCGAAAGCGGCGGGGGTGGTGGAGGTGTTGCAAAAGTTTGAGAAGGTGGGGAGTGAGAGGGGGAGGCATAAGGTGAGGAAGATATTGGAGGTTATGAGGGCCAaggaggtggaggaggaggatgtggaTTGGGAAGAGTTGCTTGACTCGGGGCTGGGTTGCCGGACTCGGGGTCGACTCGGTGGTGGCTTGGACGAGTCGGGTGCTAACTCGGCCGAGTTTTGA 1599 0.5403 MRELHHPMEIQLKKWPSPKMTPKESPQPQPIATKLKWKKIFFHTKSKTKTPPEEFLCPLSRSLMSDPVIVSSGHSFERAAVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQTTQTPPPHPPNNNLVQTLIPSTPNLIPSDKDSIFNQNPHHHAETEIPIRPTHLYSSSEESIATTSASTPPLQLSTRRSCCCSSSPSSSELEPATTPEEEEITTSLKNPNFDVVEETLLSLRKLTRVREETRLQLCTPRVLSALRSHVLSKHANVQVNALASLVNLSLEKTNKVKIVRSGMVPPLIEVLKNGSSEAQEHGAGALFSLSLDDANKTAIGVLGGLAPLLHMLRSDNELTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLKMAKAGHMTGRVLLILGNLGSGSDGRAAMLDAGVVECLVGLLSRAELTRSTRESCVAVMYALSHGGLRFKAVAKAAGVVEVLQKFEKVGSERGRHKVRKILEVMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGLDESGANSAEF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00142 532 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Cca09g00142 532 Pfam U-box domain 52 121 IPR003613 GO:0004842|GO:0016567
Cca09g00142 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 340 IPR000225 GO:0005515
Cca09g00142 532 Gene3D - 214 489 IPR011989 -
Cca09g00142 532 SUPERFAMILY RING/U-box 45 125 - -
Cca09g00142 532 PANTHER U BOX DOMAIN-CONTAINING 34 521 - -
Cca09g00142 532 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
Cca09g00142 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 34 521 - -
Cca09g00142 532 SUPERFAMILY ARM repeat 222 478 IPR016024 -
Cca09g00142 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 125 IPR013083 -
Cca09g00142 532 MobiDBLite consensus disorder prediction 174 225 - -
Cca09g00142 532 SMART arm_5 408 450 IPR000225 GO:0005515
Cca09g00142 532 SMART arm_5 246 286 IPR000225 GO:0005515
Cca09g00142 532 SMART arm_5 287 327 IPR000225 GO:0005515
Cca09g00142 532 SMART arm_5 328 368 IPR000225 GO:0005515
Cca09g00142 532 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00142 Cca-Chr9 2571230 2573227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00142 48 532 U-box Gene Family AT5G40140 58.071 7.85e-176 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00142 - - gmx:100798675 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00142 09 2571230 2573227 Cca09g00142 09 2571230 2573227 ECH
Cca09g00142 09 2571230 2573227 Cca07g02102 07 48837355 48842686 PCT