Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00134 ATGCATGGGTCCTGTCGTGAGGAGTGGAAACACAACCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCACCCATCGATTCTTCACCGTCTCAATTTATATCCAAAGATGGACGCAAGATTCGTGCTGGTGATTGTGCACTTTTCAAGCCACCCAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAATTAACATTTGATAAAGAAGAAAGTCCAAGTTTAGAAGTGAATTGGCTTTACCGACCTGCTGATTTGAAGCTTGCCAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTCTTTTACTCCTTTCATAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTTTACGACATTGAGAACAATTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACGACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAGATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGACAACATTCAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGGAAAAAGAGAGAGCGGGGTGATCAAGGTTCTGATTCATCTAAAAAAGAACGGTTATTTAAGATAGAGGATGGAGATTCTGGTCAATTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATTACTGATAAAGGTGGGCTTGTGAACTTTGAGGGAGTTCAAAGACTGGTACATCTTATGCAACCTGATAGTGCTGATAAAAAAATAGATTTGGCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTATGACTGTCTTTCCTGGTTTGTACAGCTTAGGGGTTTGCCTGTGTTGGATGAATGGCTGCAGGAGGCCCATAAGGGCAAAATTGGTGATGGAAATATGCCTAAAGAAAGTGATAAGTCTGCTGAAGAATTTTTGTTAGCTTTACTTCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCATTACAAACCTGTAATGTGGGGAAGTCTGTCAATCAATTGCGTGTCCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTAGACACATGGAAGAGACGTGTGGAAGCTGAAATGAATATGAATGATTCGAAGTCTGGTTCAAACCGCACTGTTTCTTGGCCAGCAAAGCCGGCAAATTCGGAGTCTCCTCATGTTGGAAATAGGAAAACAGGAGGATCATCATCTGATAGAGGATCATCATCTGATAATGTTGTGAAGAACACAGCATTTCAACCCGTAATATCTAAAAATTCCCAATCTAAGTTAAGTGCTGGAGAAGCATTGTCCAAGTCCTCTTCATCTTCTACCTCAACTAAAACAATGATTGCCTCAGCAGGCAGTAACTCAAAAGATCAAAACAGTAAAGTCTTGGTTGGGGCCCCAACGTCAGATCTACCACTTACACCTATAAAGGAGGAGAAAAGCAGCAGTTCTAGCCAATCTCAGAATAACAGTATATCTTGTTCTAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCGAAGAGCTCAACTGCAGTGTCAACAAGTGTGAGCAAAATTCCTGGTGGTTCATCTCGAACTCGGAAGGCAAGCAATGGTCTACATGGGACTGGTGTTGCAGTAGTGCAGAAGGAGCACAGCTCTGCTAAAAGTTCATCTAGAAATTCACCATCTGAAAAAGTTTCACCAACTCGAGTGTCCCATGAAAAATCTGCTGACCAGCCCCCTACTGATCAAGGGAATAATCAGCGGTTGATTCTCAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGCAGCGGCTCTTTTGAAGAACCAGCTATCACATGCAGCAAAGCTTTGTCTCCTGCAGACAGGAATGATAATCTGGACAGAAGAGTGAAAACTAAAACTGACTGTTTGCTGGCCCATGTGTCAAATATGATGAATGATGCATCTGATGCTAATGAAGCTCTGATTGGTGCTGACGAAAGTAAGGGATCTCCAACGGTTGAGGAGCGATGCAGGGCAAATGAAGATGGTGATAAAGTAGCTGAAACGTCGAAACCTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGTCCCATGAATGCATTAGTTGAAAGCTGTGTGAAAATTTCTGAAGCAAGTGCATCTGTGTCCCTTGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCAGGGGAAATATCCAGATCTGAAAATGCCTCACCTTTGGCATCCCCTGAGAGAAAGTCTCCTATTGATGAATTGAGCTCTGACAATGATTCCAAGTTAAAACATTCTGGTGAAGCAGCTGTGCGCGCTCTTGGACAATTGGATGGTGGACTTACTGGAGAGCATCTTTTGAATACAGTTGATTCATTACAGATAAAAAATGATTTGAGGCATCCTGCTACTGCAGTCTCACATGATATTTCAGGGGATGGTGAAACCATTTCACCCAGTTGTGCAGAAAAAACTGGTGATGGTAGAACTCAGATAATTATCTCCCCAACAGATTTGTTACAAAATGCTGAAGGTCCATGCATACGGCCAGAAACTAAGGAGGATACTTCTGAAACTATGTTGCTAGCTAAAAATGAGACTAATGCAGATTCTGGATGTTCAGACTCTAAATTGAAATCAAGGTCTTCCTCTTTAAATGATCAGAAAGTTGGTCACTTGAATGAGGAAATCATCGAGAACGAGAAAATGTTGGTTTCAAAAGATGTTGCTAGTTCTGAGGCTAAAGATGAATTAGGTGAAAAACATCCTGAGTTATCCGCATGTGTTGATAATGAGGACCCGATTAGTGAAGAAATGGCAACAGGTACAGGGATGAAAATGCTGATGACATGA 3015 0.4262 MHGSCREEWKHNRHMWPVPANATTVAPIDSSPSQFISKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTFDKEESPSLEVNWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNERQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVNFEGVQRLVHLMQPDSADKKIDLAGRIMLVDVIALTDRYDCLSWFVQLRGLPVLDEWLQEAHKGKIGDGNMPKESDKSAEEFLLALLRALDKLPVNLHALQTCNVGKSVNQLRVHKNSEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRTVSWPAKPANSESPHVGNRKTGGSSSDRGSSSDNVVKNTAFQPVISKNSQSKLSAGEALSKSSSSSTSTKTMIASAGSNSKDQNSKVLVGAPTSDLPLTPIKEEKSSSSSQSQNNSISCSSEHAKTIGSCREDAKSSTAVSTSVSKIPGGSSRTRKASNGLHGTGVAVVQKEHSSAKSSSRNSPSEKVSPTRVSHEKSADQPPTDQGNNQRLILRLPNTGRSPSRGASSGSFEEPAITCSKALSPADRNDNLDRRVKTKTDCLLAHVSNMMNDASDANEALIGADESKGSPTVEERCRANEDGDKVAETSKPSLPSGFVSRSGQTYDASLSPMNALVESCVKISEASASVSLGDDGMNLLATVAAGEISRSENASPLASPERKSPIDELSSDNDSKLKHSGEAAVRALGQLDGGLTGEHLLNTVDSLQIKNDLRHPATAVSHDISGDGETISPSCAEKTGDGRTQIIISPTDLLQNAEGPCIRPETKEDTSETMLLAKNETNADSGCSDSKLKSRSSSLNDQKVGHLNEEIIENEKMLVSKDVASSEAKDELGEKHPELSACVDNEDPISEEMATGTGMKMLMT 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00134 1004 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 310 419 IPR035441 -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 919 941 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 636 655 - -
Cca09g00134 1004 SMART BAH_4 41 156 IPR001025 GO:0003682
Cca09g00134 1004 MobiDBLite consensus disorder prediction 860 879 - -
Cca09g00134 1004 Pfam BAH domain 43 148 IPR001025 GO:0003682
Cca09g00134 1004 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 274 410 IPR035441 -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 789 818 - -
Cca09g00134 1004 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1000 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 520 579 - -
Cca09g00134 1004 SMART TFS2_5 328 407 IPR003617 GO:0005634
Cca09g00134 1004 ProSiteProfiles BAH domain profile. 41 156 IPR001025 GO:0003682
Cca09g00134 1004 CDD TFIIS_I 330 406 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 705 741 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 591 631 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 709 728 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 219 248 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 190 218 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 408 631 - -
Cca09g00134 1004 Pfam TFIIS helical bundle-like domain 356 405 IPR017923 -
Cca09g00134 1004 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1000 - -
Cca09g00134 1004 Gene3D - 32 255 IPR043151 -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 962 982 - -
Cca09g00134 1004 ProSiteProfiles TFIIS N-terminal domain profile. 322 408 IPR017923 -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 962 997 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 411 510 - -
Cca09g00134 1004 MobiDBLite consensus disorder prediction 179 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00134 Cca-Chr9 2397456 2401624 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca09g00134 BAH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00134 - - gmx:112998769 1530.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00134 09 2397456 2401624 Cca09g00134 09 2397456 2401624 ECH