Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00130 ATGTCGCAAGGATTCGCAATCGAACTATACCTAGACCCAGCGCTTGAGAATCAGGTTCTGAAAGCGTGGAATGTTCTCGCGCGGAGACAAATCAGCACACACCTAATCGAAATGGAGTCACGGCCTCACATAACCCTATTCTCCACCCCCTTTCTAGAACCTTCCAAATTGGAACCTCTCCTCAGAGCCTTCGCCTCCAAGCACGACCCTCTCCCTCTCTCCTTCTCATCCCTCGCCACCTTCCCCAACGACGCCGACAACCTCTTCTTCCTCGCCCCCACTCCCACCCTCGCCCTCCTCCACCTTCAGTCACAGCTCTGTGACGCTATCAGAAAAGAAGGCGTCGAAATCGGTGATGACTATGCCTTGGATTCTTGGATTCCGAATTGCCCCGTGGCGCGCCACGTCCCCAAGCAGAGGTTGTCTGAGGCTTTCACTCTCTTGAGGGAACTCAAGTTGCCGGTTTCCGGTTACGCTGTGGATATTGCGCTCGTTCAATACTCTCCTGTTCGGGAAGTATTCTCATTTGTGCTTGGAGATAATAGTTAG 549 0.5301 MSQGFAIELYLDPALENQVLKAWNVLARRQISTHLIEMESRPHITLFSTPFLEPSKLEPLLRAFASKHDPLPLSFSSLATFPNDADNLFFLAPTPTLALLHLQSQLCDAIRKEGVEIGDDYALDSWIPNCPVARHVPKQRLSEAFTLLRELKLPVSGYAVDIALVQYSPVREVFSFVLGDNS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00130 182 SUPERFAMILY LigT-like 5 154 IPR009097 -
Cca09g00130 182 Gene3D Cyclic phosphodiesterase 5 180 - -
Cca09g00130 182 Pfam 2'-5' RNA ligase superfamily 41 167 - -
Cca09g00130 182 PANTHER - 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00130 Cca-Chr9 2352803 2355265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00130 1 180 Calmodulin-binding Proteins AT5G40190 62.778 2.76e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00130 - - gmx:100802388 313.153