Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00125 ATGTATCCTAGGTTGTTGTTTTATGACCACACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAAAAAGACGGTTACTTGGGCTACTCACCACCTCTTTTGTCTTCACCATACCCTCCTGGTCCTTCTTTCCACAAGGAATCATCATTGCCTTCTTCAACACCGCCTTCATCATCTGGCACAAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATGAAGCACCCTTCTTCTTCTGCATCTGCTCAATCCACCAGGCAACAAGAGATTTCCACATCTGATGCTCTCCAGAGGCAGCTTCAGCAGCTCTTCCACCTGCATGACTCTGGCTTGGATCAAGCCTTCATTGATGCTCTTCCTGTTTTTCAGTACAAGGAGATTGTGGGGTTGAAGGAGCCTTTTGACTGTGCTGTTTGCTTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCTTTCCACATAAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTCACACAAGGGTTTTCCATTGAGAATCCAATATTTGATTTTGATGATCTGAGGGAGGATGAAGGATGCCCTTGTAGTGTAGACAGTGGATTCACTACTAGGCAGAAAACTGTTGTGGCTGAAGAAACTGTGGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAGTTCAAGAAGCTGAATGTGGAGAGTGGGGAGAGGGAAGTGGGAGAGACTAGTAGTAGCAATTTGGATGCAAGAAGGTGTTATTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTAAGGGTGGCCTTGAACCATGAAAGTAAGGGTCAATTCACAAGAAGGCTCACCAAAGGAATGATGGAACATGGTGATGATGGGAAGCTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGCTGTGGCCAAAGAGGGGGAAATTACCTGGTTCTTCTTTGGATGCTCAATTGGGCATGCCAGTGCCATCTTATACAGATTTTCAAGGGATGAGGGAAACACAAGGGGCATGA 1170 0.453 MYPRLLFYDHTHLKMAWVKHQIQQKDGYLGYSPPLLSSPYPPGPSFHKESSLPSSTPPSSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLMKHPSSSASAQSTRQQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCSVDSGFTTRQKTVVAEETVEKGVFPVRLGKFKKLNVESGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHESKGQFTRRLTKGMMEHGDDGKLSVEGDVEAKKISSVSKGDSFSVSKIWLWPKRGKLPGSSLDAQLGMPVPSYTDFQGMRETQGA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00125 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 368 - -
Cca09g00125 389 SUPERFAMILY RING/U-box 136 205 - -
Cca09g00125 389 SMART ring_2 157 198 IPR001841 -
Cca09g00125 389 CDD RING-H2_PA-TM-RING 156 199 - -
Cca09g00125 389 Pfam Ring finger domain 156 199 IPR001841 -
Cca09g00125 389 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Cca09g00125 389 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 15 368 - -
Cca09g00125 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00125 Cca-Chr9 2260668 2261837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00125 54 365 C3H Transcription Factor Family AT2G18650 41.618 2.39e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00125 - - gmx:100806337 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00125 09 2260668 2261837 Cca09g00125 09 2260668 2261837 ECH