Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00119 ATGATCATGGAACTCTCCGATTCCACCGGCGGCGACCGCAACCTCAACGCGCCGCCGCACCATCACCAAGACGCGCGCTCCGGCCTCGGAATCGACCTCAACGAGATCCCTTCGCCTTCCTCTTCCTTCGCCGAAACCCTACCGGACTCCGCCGTCGACATCGTCCGCGCCTACCACGAGAACCCCGCGCCGCCGCCGGGAGGGCCCGCCGCCCTCCCCCGCGGCCCGGCTCCCCGCGCCGCCTGCGCCAAGCCCGCCGCCTGGGTCTGCGGCGAGTGTGTCGCCGCCGGAGTGAAGAGCAAGCGGTGGCCGCTGGGGGTTAAGTCCAAGCAGCTTCtcgacatcaacgctccgccgccgagcgacgtcgacggcgacggtgacgAGGTGCAGGAGTTGAGAAAGCACACTCTGGGTGATAATCCATTTGGTGCCCCAGTGACGTATTCAAACTTATACAATGGGAATGCTATTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCAATTACTAGAAGCTTTGAGGAGGCTCTTAGAGATTTTATATCCGAACGGCGTGGTGTGCTAGAGGAAGGCTGGCGAGTGGAATTTAGACAATCAGTGAGCAGCTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTATCGTCTGGCAACAACTCTATTGAATCTGAACTAAGAAATGAAAGGTCTCTCCCTTCTTTAGGTGGGCCTCTATCTAGAAAAAGAAAGTCAACAAGAACTCCAGTAGCCAATGGTTTTGTAGAAAAACGGGGAGCAACGATGAATAGTAATTGTAAGGATCCTCCTTCTGATGGTTTAAATGTGGAATGTGCTAGTGCTCAGGGTAATATCCCAAAATCCTCTGAAACTGGAAGAAAAGAGGATGGCCACTCCTGCACTAAGCAATCTTCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGGAAAGTTGATGTGAGACCTTCATATTATGATGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCACGACAAGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCCGGACCTATATTTAGGATCCAAAGGTGTTCCTGTTCAAAAATTCCTGTTCCAGTTGGATCAACAATCCTCTCAATGTCAAAACTTTGTCAATTTGTTAGTCAAACCACTGAAGGTGGGAGAAAAACTAATGGTAGTATGGATATAGATGATGATGAAAGTATCCAGATGATGCTTATAGACCCTTGTGTGCCAACGGGAAATGATGTCGCAAGTTGCTTTGCAAGCTTCTCAATTGAGGATCCTCTTTCATCAGATGTATTACACCCTGTTGCTGGTTCAGTTCAAGATAATACTAGAAATTCATTAGCTGATAACTTAGGGTTTAATGATGGAATTGGTGAACTTTTGCGGTCATCAAAATCTGCTTGGAGTGTTATTTCCCAAAAGTTAGTTAATGCTTGCAAGGATGTCTGTAAACAAAAAGGAACACTGAAGTTCTATTGTAACCATGTTGAAAATGAAACATGCTTACATAAATGGGATTTAAAGAATGGAAAAAGTGATACTTACTTAACTTCGTTGGATAAATTTTGTGGTTCTCTAGGTTCGTTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTATGACACACTGGGAAAATGGTTGGAGCAGGATAGATTTGGTTTAGATGTTGAATTTGTGCAAGAAGTATTGGAGCGGCTTCCTGGTGTCGAAGACTCTTTTTTGCAGTATGAACTTTTAAAAGACAGAAATAATAGCTCATCATTGCCGACAGTAGAAAATGGTTTCTTAGAGGTTGAGTGGAGAGATGGATCAAAATATCAGGAAGAAGCAGTTCAAAATTTATACAGGAGAACCGGGAAGTCGAGGTTGACTGGAAAAAGCATTAAGGAAGGTTGTCATCCACCACTTGGGAAACCATTATGCTCTAGGGCTCCTGTTGAGCTCATTGGTGCTATTTTTCAGGCTTGGGAGCTGTTAGAGCGATTTCATGAAATTCTGGACCTGAAAGAACCATTGTCATTAGATGAACTTGAGAAGGAACTTATGAATCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGAGACATGGATGAATGCCAAGTTTTAATTTCCCAAGAAGCTGATGGTAATTGTAGACCATTGTTGTCCCCAAGATGTGAAGCTGGTCCATCAGGTTCCTTTGAAAGTTCTCATGCATTTATTCAACTGGAAACAGAAGCAATAAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACTTATGACAGATGCTTTGGTGTAGTTTTGACCAAGGCTCATGATTCATTGCTAAGAGTGCTAATAGGTGAATTGCTATCAAGGGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGTGGAAGAAGGAAAGATATGGATAGTGCTGTTCCTGCTAAACGAACCAAGCTCAACATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCATAGATACATCTTGGCTTTTTTATCAATGGATGGTAACCTTGAGTCTGCAGAAATTACTGCTCGTGAAAGTGGTAAGGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACCGGTGTGGCCGGGATGGAAGCAGATGCACTGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCAGAGAAAATGATGTACTAACCATGGAAGAAGAAGAGTCTGATGCAAAGGGCACTTCTGAAAATATTTTGGCAAATGATGGTAGTGTTCCTGAATGGGCACAGATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGTACCCGAATCAGAAAGTGTGTTTATGATGCTTTGGGTAAGGATCCACCAGAATGGGCAAAGAAGATACTGGAGCGATCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTAATGTTGTTGGTGAAGGATTGCAATCAAATCCCAGTAAAGGACAGAAAAAGAAGATTGTTATATCTGTTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGTCGTGCCGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTTGGTAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCGGCCATGGTGTCCCGTCCTCTTGACTTCCGCACTATTGACCTAAGATTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGGGAGCTGTGGAACAATGTTCATGTTGCTTTCGGGGATCAACCTGATTTAGTTGAACTAGCTGAAAAATTATCCCAAAACTTTGAATCACTATATAATGAGGAGGTTGTCACCTATGTCCAAAAATTTGTGGAGTATGCTAAACTGGAATGCTTAAGTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGACAACAAATGAGATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTGTGTGGCATTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAGGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAAGTAACACAGATTAAAGGCAAACGACGAAGTAAAAAATTCCAGGGGGAAGTTAATTCTCTTTACTTGGAATCTCTAACCCAGTTATCAACTGTAATTGAAGAAAAAGAGTACTGGGAGTATAGCATGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGATACGCCAGCACCTTGAGCAATGTTCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACACTCCGTAGAGTGGAAAAGCCTGAAAACTAGAGAGGATATTTTATCTGCAAAAGCTGCCAAAATTGATACATACTCACTAAATACTGCTGGAGAAGTTGGTCTTAAGGAAGGAATTGCTTCTTTATTATCAAGTTCTGGTAAATGTCTGGTCCAGTCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCGGAAGAGATTACCAAAGAGAAGTATAGGTTTGACAGTGTTGATAAAAGCATATCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATGTACTGACAAATCTCCCAAGTCTTTATCATCGCCAAATCACATGTCTCAAGAAATAAATGGTGCAGCTCATGTCCAGGCTAACCACCAGAAATGTGAGGGAAGGGACATATCTACTCCTGTGACATGCCAGCAAGGAGGAGTGCCTGTTGATGTTCCTCAGATTACTGTGAATGAGTCAGAACCATACCAACTTGAGCTCAATGCTATCAGGCGTGATATTTCACTATTGCAGGACTCCATAACTAGTGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATTGGTCGACTGTACTGGGCTTCGGCTTTGCCCAGAGGACGTTCACGGATAGTTGTTGATGCAAGTGCTGCATTGCTGCATGGAAGAGGAACATCGTTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGCATTGTTCACTATCTGACAAAAATTCCTCTCCTTTAATGTCTCAGCCTAGTAATACTTTGGGCAATAGTTCACCATGGATTGCTTATGAAACTGATGCTGAAATCGAAGAGCTCTTAGGTTGGCTGGATGATAGTGACCCTAAAGAAAGAGAACTGAAAGACTCAATTATTCAGGGCCCAAAATCAAGATTCCAAGAGTTTCTTAATGCACAGACTGAAAATCAGGTTGAGGATCAAGGACCTATTTCTATGCCAAGAAAAAGGGAGAAAACAGTATCTAATTCTCTTGTTACAAAGGCGACTGCCTTGCTGGAAAAGAAATTTGGTCCCTTTGTTGAGTGGGATAATATTGAGGTGTTGAATAAGCAAAATAAAAAGGCCAGAACAACTAATGATGAAAAGTTGTATAGGTGTGAATGCCTAGAACCCATATTGCCTTCTAGGAAACACTGCACGTGTTGTCACAAAACTGTTTCTAGTGATGTTGAACTTGATGGACACAATGATGGCAAGTGCAATGCAGGTCTTCCAGCCTCAGAGAAGAATAAGGATAAAAGTGGATCTTCTAAAGGAAGAGGGAACTTAAAATGTGATATCTCAAATGAGAATTCCAGAGCTGATGCAGAAACAGCTGCAACCAGAGTCAGTGGGTGTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAGTTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCTAACAAGGAACTTGTCAGAGAGATAGGTCTTATTGGTTCAGACGGTATCCCATCCTTTGTTCCTTCTGTATCTTCTTTTGTTAGTGATTCTACGTTATTCTTAGTTCAAAAGGATGATAGCATTGTTGGTGGTGTGTCCAAAGTGTCAGAAAGCCAGGTTTCTCAAGGAAACACTGATGGAGTTGGCACATGTCTTGACCATAGATCAGGCATTTCTACTGGAAGGTTAGCTGCAAATGAAAGCAATAAATCCAACAAATCATCCTTGGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTAGTCCTGCTTCAGATACAGGAGTTGATGGCTGCTGTGTGGTTCCTTTGTCTTCATTGAGACCGTTAGATGGTAAAGCTTTTCACATTTTGAGGCAGCTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCGGAAATTGCTCTAAGACCATCAAAGGCCCCGTCTGACCGAAGACAGGCTTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGATTCAGGCAACAATCACGCTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCGTTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTTAGCAATTATATATGAGAAAATGCCCAATTCAAATGTTACTGACAACTCTGAACCTTGTGCCATAGTGGAACAGAAATCACCGATGACTGTGGATGCAGAGAAATCCAAACCATGCCGAAAGTCAAACAGAAAAAGGAAGGAACTAGATGGTTAA 6477 0.4199 MIMELSDSTGGDRNLNAPPHHHQDARSGLGIDLNEIPSPSSSFAETLPDSAVDIVRAYHENPAPPPGGPAALPRGPAPRAACAKPAAWVCGECVAAGVKSKRWPLGVKSKQLLDINAPPPSDVDGDGDEVQELRKHTLGDNPFGAPVTYSNLYNGNAIGFQKASGVVTHAVRVGFEDILNHTQSITRSFEEALRDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLSSGNNSIESELRNERSLPSLGGPLSRKRKSTRTPVANGFVEKRGATMNSNCKDPPSDGLNVECASAQGNIPKSSETGRKEDGHSCTKQSSDGLPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIQRCSCSKIPVPVGSTILSMSKLCQFVSQTTEGGRKTNGSMDIDDDESIQMMLIDPCVPTGNDVASCFASFSIEDPLSSDVLHPVAGSVQDNTRNSLADNLGFNDGIGELLRSSKSAWSVISQKLVNACKDVCKQKGTLKFYCNHVENETCLHKWDLKNGKSDTYLTSLDKFCGSLGSFGIPDVIYADSDLEGIYDTLGKWLEQDRFGLDVEFVQEVLERLPGVEDSFLQYELLKDRNNSSSLPTVENGFLEVEWRDGSKYQEEAVQNLYRRTGKSRLTGKSIKEGCHPPLGKPLCSRAPVELIGAIFQAWELLERFHEILDLKEPLSLDELEKELMNPWFDGLDFLEKSERDMDECQVLISQEADGNCRPLLSPRCEAGPSGSFESSHAFIQLETEAIKEAAQVKLASFTYDRCFGVVLTKAHDSLLRVLIGELLSRVAALVDPNSEPGETRTRRGRRKDMDSAVPAKRTKLNMLPINELTWPELAHRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEEESDAKGTSENILANDGSVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWAKKILERSISKEVYKGNASGPTKKAVLSVLANVVGEGLQSNPSKGQKKKIVISVSDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVHVAFGDQPDLVELAEKLSQNFESLYNEEVVTYVQKFVEYAKLECLSAEMRKEVDDFIETTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTEVTQIKGKRRSKKFQGEVNSLYLESLTQLSTVIEEKEYWEYSMGERTFLLKFLCDELLNSSLIRQHLEQCSELSAELHQKLRAHSVEWKSLKTREDILSAKAAKIDTYSLNTAGEVGLKEGIASLLSSSGKCLVQSHTAVDNPSNFGVFVDSLPSEEITKEKYRFDSVDKSISVTNSDSDSQNMNSIDVEGQFRNVSGAVESQCTDKSPKSLSSPNHMSQEINGAAHVQANHQKCEGRDISTPVTCQQGGVPVDVPQITVNESEPYQLELNAIRRDISLLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWASALPRGRSRIVVDASAALLHGRGTSFSRDYVEKFSVLQHCSLSDKNSSPLMSQPSNTLGNSSPWIAYETDAEIEELLGWLDDSDPKERELKDSIIQGPKSRFQEFLNAQTENQVEDQGPISMPRKREKTVSNSLVTKATALLEKKFGPFVEWDNIEVLNKQNKKARTTNDEKLYRCECLEPILPSRKHCTCCHKTVSSDVELDGHNDGKCNAGLPASEKNKDKSGSSKGRGNLKCDISNENSRADAETAATRVSGCSKLSSRLIKFSNEESTCPFSFEDICSKFVTNDSNKELVREIGLIGSDGIPSFVPSVSSFVSDSTLFLVQKDDSIVGGVSKVSESQVSQGNTDGVGTCLDHRSGISTGRLAANESNKSNKSSLGEQRDGKFSFCSPASDTGVDGCCVVPLSSLRPLDGKAFHILRQLKINLLDMDAALPEIALRPSKAPSDRRQAWRAFVKSAETIYEMIQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKMPNSNVTDNSEPCAIVEQKSPMTVDAEKSKPCRKSNRKRKELDG 2158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00119 2158 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 25 2158 - -
Cca09g00119 2158 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1309 1353 IPR028942 -
Cca09g00119 2158 SUPERFAMILY Bromodomain 1064 1184 IPR036427 GO:0005515
Cca09g00119 2158 MobiDBLite consensus disorder prediction 313 334 - -
Cca09g00119 2158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1215 1300 IPR013083 -
Cca09g00119 2158 SUPERFAMILY DNA-binding domain 195 245 IPR016177 GO:0003677
Cca09g00119 2158 MobiDBLite consensus disorder prediction 256 278 - -
Cca09g00119 2158 ProSiteProfiles FYR domain FYRN motif profile. 337 390 IPR003888 GO:0005634
Cca09g00119 2158 Gene3D - 1071 1193 IPR036427 GO:0005515
Cca09g00119 2158 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 194 261 IPR001739 GO:0003677
Cca09g00119 2158 Pfam PHD-finger 1229 1275 IPR019787 -
Cca09g00119 2158 SUPERFAMILY FYVE/PHD zinc finger 1217 1279 IPR011011 -
Cca09g00119 2158 Pfam Methyl-CpG binding domain 195 247 IPR001739 GO:0003677
Cca09g00119 2158 MobiDBLite consensus disorder prediction 1807 1832 - -
Cca09g00119 2158 ProSitePatterns Zinc finger PHD-type signature. 1230 1274 IPR019786 -
Cca09g00119 2158 ProSiteProfiles Bromodomain profile. 1120 1168 IPR001487 GO:0005515
Cca09g00119 2158 PANTHER OS02G0192300 PROTEIN 25 2158 - -
Cca09g00119 2158 MobiDBLite consensus disorder prediction 1 30 - -
Cca09g00119 2158 CDD Bromodomain 1075 1182 - -
Cca09g00119 2158 ProSiteProfiles Zinc finger PHD-type profile. 1227 1277 IPR019787 -
Cca09g00119 2158 Gene3D - 338 447 - -
Cca09g00119 2158 MobiDBLite consensus disorder prediction 2131 2158 - -
Cca09g00119 2158 CDD PHD1_Lid2p_like 1229 1274 - -
Cca09g00119 2158 MobiDBLite consensus disorder prediction 2137 2158 - -
Cca09g00119 2158 Pfam Bromodomain 1118 1173 IPR001487 GO:0005515
Cca09g00119 2158 SMART PHD_3 1229 1275 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00119 3 2158 C2H2 Transcription Factor Family AT3G01460 44.699 0.0 1715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca09g00119 Bromodomain 4.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00119 K22768 - gmx:100820223 3532.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00119 09 2130132 2144698 Cca09g00119 09 2130132 2144698 ECH